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Report for CCDS43755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43755.1 Public Homo sapiens 8 RBM12B 24 110 108 CCDS HistoryNCBI Gene:389677Re-query CCDS DB by CCDS ID:43755.1Re-query CCDS DB by GeneID:389677See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43755.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399300.7 ENSP00000382239.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399300.7Link to Ensembl Protein Viewer:ENSP00000382239.2Re-query CCDS DB by Nucleotide ID:ENST00000399300Re-query CCDS DB by Protein ID:ENSP00000382239
Original member Current member EBI ENST00000517700.6 ENSP00000427729.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517700.6Link to Ensembl Protein Viewer:ENSP00000427729.2Re-query CCDS DB by Nucleotide ID:ENST00000517700Re-query CCDS DB by Protein ID:ENSP00000427729
Original member Current member EBI ENST00000518597.2 ENSP00000428269.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518597.2Link to Ensembl Protein Viewer:ENSP00000428269.2Re-query CCDS DB by Nucleotide ID:ENST00000518597Re-query CCDS DB by Protein ID:ENSP00000428269
Original member Current member EBI ENST00000520560.6 ENSP00000429807.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000520560.6Link to Ensembl Protein Viewer:ENSP00000429807.2Re-query CCDS DB by Nucleotide ID:ENST00000520560Re-query CCDS DB by Protein ID:ENSP00000429807
Original member Current member EBI ENST00000519109.6 ENSP00000430474.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519109.6Link to Ensembl Protein Viewer:ENSP00000430474.2Re-query CCDS DB by Nucleotide ID:ENST00000519109Re-query CCDS DB by Protein ID:ENSP00000430474
Original member Current member NCBI NM_001377960.1 NP_001364889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377960.1Link to Protein Sequence:NP_001364889.1Re-query CCDS DB by Nucleotide ID:NM_001377960Re-query CCDS DB by Protein ID:NP_001364889Link to BLAST:NP_001364889.1
Original member Current member NCBI NM_001377961.1 NP_001364890.1 Accepted alive Link to Nucleotide Sequence:NM_001377961.1Link to Protein Sequence:NP_001364890.1Re-query CCDS DB by Nucleotide ID:NM_001377961Re-query CCDS DB by Protein ID:NP_001364890Link to BLAST:NP_001364890.1
Original member Current member NCBI NM_001377962.1 NP_001364891.1 Accepted alive Link to Nucleotide Sequence:NM_001377962.1Link to Protein Sequence:NP_001364891.1Re-query CCDS DB by Nucleotide ID:NM_001377962Re-query CCDS DB by Protein ID:NP_001364891Link to BLAST:NP_001364891.1
Original member Current member NCBI NM_001377963.1 NP_001364892.1 Accepted alive Link to Nucleotide Sequence:NM_001377963.1Link to Protein Sequence:NP_001364892.1Re-query CCDS DB by Nucleotide ID:NM_001377963Re-query CCDS DB by Protein ID:NP_001364892Link to BLAST:NP_001364892.1
Original member Current member NCBI NM_001377964.1 NP_001364893.1 Accepted alive Link to Nucleotide Sequence:NM_001377964.1Link to Protein Sequence:NP_001364893.1Re-query CCDS DB by Nucleotide ID:NM_001377964Re-query CCDS DB by Protein ID:NP_001364893Link to BLAST:NP_001364893.1
Original member Current member NCBI NM_203390.4 NP_976324.2 Accepted alive Link to Nucleotide Sequence:NM_203390.4Link to Protein Sequence:NP_976324.2Re-query CCDS DB by Nucleotide ID:NM_203390Re-query CCDS DB by Protein ID:NP_976324Link to BLAST:NP_976324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364889.1 1001 Q8IXT5 1001 100% 0 0
NP_001364890.1 1001 Q8IXT5 1001 100% 0 0
NP_001364891.1 1001 Q8IXT5 1001 100% 0 0
NP_001364892.1 1001 Q8IXT5 1001 100% 0 0
NP_001364893.1 1001 Q8IXT5 1001 100% 0 0
NP_976324.2 1001 Q8IXT5 1001 100% 0 0

Chromosomal Locations for CCDS 43755.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93733405 93736410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3006 nt):
ATGGCTGTAGTCATCCGTTTACTGGGGCTTCCTTTTATTGCGGGGCCTGTGGATATTCGTCACTTCTTCA
CGGGATTGACTATTCCTGATGGAGGAGTGCATATAATTGGAGGGGAAATTGGGGAGGCTTTTATTATTTT
TGCAACAGATGAAGATGCAAGACGTGCCATAAGTCGTTCAGGAGGGTTTATCAAGGATTCATCTGTAGAG
CTCTTTCTTAGTAGCAAGGCAGAAATGCAGAAGACTATAGAAATGAAAAGAACTGATCGTGTAGGAAGAG
GGCGTCCAGGATCTGGGACATCAGGGGTTGACAGCCTGTCTAATTTTATTGAGTCTGTTAAGGAAGAAGC
AAGTAATTCTGGATATGGCTCTTCAATTAATCAAGATGCTGGGTTTCATACTAATGGTACAGGACATGGT
AATTTAAGGCCAAGAAAGACAAGGCCATTGAAGGCCGAGAATCCTTACTTGTTTCTACGAGGTTTGCCTT
ACCTAGTAAATGAAGATGATGTACGTGTCTTTTTCTCTGGTTTGTGCGTGGATGGAGTAATTTTCTTAAA
ACATCATGATGGCCGAAATAATGGTGATGCCATAGTAAAATTTGCTTCATGTGTTGATGCTTCAGGAGGT
CTTAAATGTCATAGAAGTTTTATGGGTTCAAGATTTATAGAAGTAATGCAAGGATCAGAACAACAGTGGA
TTGAGTTTGGTGGTAATGCAGTTAAGGAGGGTGACGTTCTTAGGAGATCTGAAGAACATTCTCCACCAAG
AGGAATTAATGATAGACATTTTCGAAAACGGTCTCATTCAAAATCTCCCAGAAGAACACGTTCTCGTTCC
CCTCTTGGATTTTATGTTCACTTAAAAAATCTGTCCCTCAGTATTGACGAAAGAGATTTAAGAAATTTCT
TTAGAGGTACTGATCTGACTGATGAACAGATTAGGTTTTTATATAAAGATGAAAATAGAACAAGATATGC
CTTTGTGATGTTCAAGACTCTGAAAGACTATAATACCGCTCTGAGTTTACATAAGACTGTTTTACAATAT
CGTCCAGTTCATATTGATCCAATTTCTAGAAAACAAATGCTGAAGTTCATTGCACGTTATGAAAAGAAGA
GATCAGGGTCACTAGAGAGAGATAGGCCCGGACATGTTTCACAAAAATACTCTCAAGAAGGTAACTCTGG
CCAGAAACTGTGCATCTATATAAGAAATTTTCCATTTGATGTTACAAAAGTTGAAGTGCAGAAGTTCTTT
GCAGACTTTCTTCTTGCTGAGGATGACATTTACTTGCTTTATGATGACAAAGGTGTTGGTCTGGGAGAAG
CATTAGTGAAATTTAAATCAGAAGAACAGGCCATGAAAGCTGAACGTTTAAACCGACGAAGATTCCTAGG
GACAGAGGTGTTATTAAGACTTATATCTGAGGCACAAATACAGGAGTTTGGTGTAAATTTTTCTGTGATG
TCCAGTGAAAAAATGCAAGCTCGCTCACAGTCACGTGAGCGAGGTGACCATTCCCATTTATTTGACTCAA
AAGACCCACCAATATACTCAGTTGGTGCTTTTGAAAACTTTAGACATCAGCTAGAGGACTTGAGGCAACT
GGATAACTTCAAGCATCCCCAGAGGGATTTCCGGCAGCCTGACAGGCACCCTCCAGAAGACTTCCGACAC
TCCTCAGAGGACTTTAGGTTCCCCCCGGAGGACTTCAGGCACTCCCCAGAGGACTTCAGGCGACCTAGGG
AGGAAGACTTCAGGCGGCCTTCTGAGGAGGACTTCAGGCGCCCTTGGGAGGAAGATTTCAGGCGCCCTCC
GGAGGATGACTTCAGGCACCCTAGGGAGGAGGACTGGAGGAGGCCCCTTGAGGAGGACTGGAGGCGGCCA
CTGGAGGAGGATTTCAGGCGGTCTCCCACGGAGGACTTCAGGCAGCTCCCCGAGGAGGACTTCAGGCAAC
CCCCTGAGGAGGACTTAAGGTGGCTCCCAGAGGAAGATTTCAGGCGGCCACCTGAGGAGGACTGGAGACG
GCCCCCAGAGGAGGACTTTAGGCGGCCTCTTCAGGGAGAATGGAGGCGACCACCCGAGGATGACTTCAGG
CGGCCCCCAGAGGAGGATTTCAGGCATTCCCCTGAGGAGGACTTCAGGCAGTCACCCCAGGAGCATTTCC
GGAGGCCACCTCAGGAGCATTTCCGTCGGCCACCCCCAGAGCATTTCCGGAGACCACCTCCAGAGCATTT
TAGGCGGCCTCCCCCAGAGCACTTCCGGCGGCCACCCCCAGAGCACTTCAGGCGGCCACCCCCAGAGCAT
TTCAGGCGCCCGCCCCCGGAGCACTTCCGGAGACCGCCCCAGGAGCATTTCAGGCGGCCGCCTCAGGAGC
ATTTCAGGCGCTCCCGAGAGGAAGATTTCAGGCACCCACCAGATGAAGACTTCAGGGGCCCTCCTGATGA
AGACTTTAGGCACCCTCCTGATGAGGACTTCAGGAGCCCCCAGGAGGAAGATTTTAGATGCCCTTCTGAT
GAGGACTTCAGGCAGCTCCCAGAGGAAGACCTTAGGGAAGCTCCGGAGGAGGACCCTAGACTTCCTGACA
ATTTTAGACCTCCTGGTGAGGATTTTAGGAGCCCGCCTGATGATTTTAGAAGTCACCGCCCTTTTGTGAA
TTTTGGTCGCCCAGAAGGTGGCAAGTTTGATTTTGGAAAGCATAATATGGGAAGTTTTCCTGAGGGGAGA
TTTATGCCTGATCCAAAAATAAATTGTGGTTCAGGTAGAGTAACTCCTATTAAGATAATGAATCTTCCAT
TTAAAGCTAATGTGAATGAAATTTTAGACTTTTTCCATGGTTACAGAATCATACCTGATTCAGTTTCGAT
ACAGTATAATGAGCAAGGCTTACCTACAGGGGAAGCCATTGTTGCTATGATAAACTATAATGAAGCTATG
GCTGCTATTAAAGATCTAAATGATAGGCCAGTTGGGCCCCGAAAAGTTAAGTTAACTTTGCTGTAG

Translation (1001 aa):
MAVVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEIGEAFIIFATDEDARRAISRSGGFIKDSSVE
LFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGYGSSINQDAGFHTNGTGHG
NLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGG
LKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRS
PLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHKTVLQY
RPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFF
ADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQIQEFGVNFSVM
SSEKMQARSQSRERGDHSHLFDSKDPPIYSVGAFENFRHQLEDLRQLDNFKHPQRDFRQPDRHPPEDFRH
SSEDFRFPPEDFRHSPEDFRRPREEDFRRPSEEDFRRPWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRP
LEEDFRRSPTEDFRQLPEEDFRQPPEEDLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFR
RPPEEDFRHSPEEDFRQSPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEH
FRRPPPEHFRRPPQEHFRRPPQEHFRRSREEDFRHPPDEDFRGPPDEDFRHPPDEDFRSPQEEDFRCPSD
EDFRQLPEEDLREAPEEDPRLPDNFRPPGEDFRSPPDDFRSHRPFVNFGRPEGGKFDFGKHNMGSFPEGR
FMPDPKINCGSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAM
AAIKDLNDRPVGPRKVKLTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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