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Report for CCDS6515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6515.1 Public Homo sapiens 9 ELAVL2 24 110 108 CCDS HistoryNCBI Gene:1993Re-query CCDS DB by CCDS ID:6515.1Re-query CCDS DB by GeneID:1993See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380117.5 ENSP00000369460.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380117.5Link to Ensembl Protein Viewer:ENSP00000369460.1Re-query CCDS DB by Nucleotide ID:ENST00000380117Re-query CCDS DB by Protein ID:ENSP00000369460
Original member Current member EBI ENST00000397312.7 ENSP00000380479.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397312.7Link to Ensembl Protein Viewer:ENSP00000380479.2Re-query CCDS DB by Nucleotide ID:ENST00000397312Re-query CCDS DB by Protein ID:ENSP00000380479
Original member Current member EBI ENST00000544538.5 ENSP00000440998.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544538.5Link to Ensembl Protein Viewer:ENSP00000440998.1Re-query CCDS DB by Nucleotide ID:ENST00000544538Re-query CCDS DB by Protein ID:ENSP00000440998
Original member Current member NCBI NM_001351472.2 NP_001338401.1 Accepted alive Link to Nucleotide Sequence:NM_001351472.2Link to Protein Sequence:NP_001338401.1Re-query CCDS DB by Nucleotide ID:NM_001351472Re-query CCDS DB by Protein ID:NP_001338401Link to BLAST:NP_001338401.1
Original member Current member NCBI NM_001351473.2 NP_001338402.1 Accepted alive Link to Nucleotide Sequence:NM_001351473.2Link to Protein Sequence:NP_001338402.1Re-query CCDS DB by Nucleotide ID:NM_001351473Re-query CCDS DB by Protein ID:NP_001338402Link to BLAST:NP_001338402.1
Original member Current member NCBI NM_001351474.2 NP_001338403.1 Accepted alive Link to Nucleotide Sequence:NM_001351474.2Link to Protein Sequence:NP_001338403.1Re-query CCDS DB by Nucleotide ID:NM_001351474Re-query CCDS DB by Protein ID:NP_001338403Link to BLAST:NP_001338403.1
Original member Current member NCBI NM_001351475.2 NP_001338404.1 Accepted alive Link to Nucleotide Sequence:NM_001351475.2Link to Protein Sequence:NP_001338404.1Re-query CCDS DB by Nucleotide ID:NM_001351475Re-query CCDS DB by Protein ID:NP_001338404Link to BLAST:NP_001338404.1
Original member Current member NCBI NM_001351476.2 NP_001338405.1 Accepted alive Link to Nucleotide Sequence:NM_001351476.2Link to Protein Sequence:NP_001338405.1Re-query CCDS DB by Nucleotide ID:NM_001351476Re-query CCDS DB by Protein ID:NP_001338405Link to BLAST:NP_001338405.1
Original member Current member NCBI NM_001385703.1 NP_001372632.1 Accepted alive Link to Nucleotide Sequence:NM_001385703.1Link to Protein Sequence:NP_001372632.1Re-query CCDS DB by Nucleotide ID:NM_001385703Re-query CCDS DB by Protein ID:NP_001372632Link to BLAST:NP_001372632.1
Original member Current member NCBI NM_004432.5 NP_004423.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004432.5Link to Protein Sequence:NP_004423.2Re-query CCDS DB by Nucleotide ID:NM_004432Re-query CCDS DB by Protein ID:NP_004423Link to BLAST:NP_004423.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338401.1 359 Q12926-1 359 100% 0 0
NP_001338402.1 359 Q12926-1 359 100% 0 0
NP_001338403.1 359 Q12926-1 359 100% 0 0
NP_001338404.1 359 Q12926-1 359 100% 0 0
NP_001338405.1 359 Q12926-1 359 100% 0 0
NP_001372632.1 359 Q12926-1 359 100% 0 0
NP_004423.2 359 Q12926-1 359 100% 0 0

Chromosomal Locations for CCDS 6515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 23692557 23692884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23693448 23693486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23701379 23701604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23704918 23705071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23731022 23731125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23762006 23762234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACCATAAACAACA
ACTGTTCGTCACCAGTTGACTCTGGGAACACAGAAGACAGCAAGACCAACTTAATAGTCAACTACCTTCC
TCAGAACATGACACAGGAGGAACTAAAGAGTCTCTTTGGGAGCATTGGTGAAATAGAGTCCTGTAAGCTT
GTAAGAGACAAAATAACAGGGCAGAGCTTGGGATATGGCTTTGTGAACTACATTGACCCCAAGGATGCAG
AGAAAGCTATCAACACCCTGAATGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGCCC
AAGTTCAGCTTCTATCAGAGATGCAAATTTATATGTCAGCGGACTTCCAAAAACAATGACCCAGAAGGAG
TTGGAACAGCTTTTTTCACAATATGGACGCATTATTACTTCTCGTATTCTTGTCGACCAGGTCACTGGCA
TATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGAATTGAGGCAGAAGAAGCTATCAAAGGCCTAAA
TGGCCAGAAACCTCCCGGTGCCACGGAGCCAATCACTGTAAAGTTTGCTAATAACCCAAGCCAAAAAACC
AATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTATCCAGGACCGCTAGCTCAGCAGG
CACAGCGTTTTAGGTTGGACAATCTGCTCAATATGGCTTATGGAGTAAAGAGGTTTTCTCCAATGACCAT
TGACGGAATGACCAGTTTGGCTGGAATTAATATCCCTGGGCACCCTGGAACAGGGTGGTGTATATTTGTG
TACAACCTGGCTCCTGACGCAGATGAGAGTATCCTGTGGCAAATGTTTGGGCCTTTTGGAGCTGTCACCA
ATGTGAAGGTCATCCGTGACTTTAACACCAATAAATGCAAAGGTTTTGGATTTGTGACTATGACAAACTA
TGATGAGGCTGCCATGGCGATAGCTAGCCTCAATGGATACCGTCTGGGAGACAGAGTACTGCAGGTCTCC
TTTAAGACAAACAAAACGCACAAAGCCTAA

Translation (359 aa):
METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL
VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE
LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT
NQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFV
YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
FKTNKTHKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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