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Report for CCDS41246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41246.1 Public Homo sapiens 1 CASZ1 24 110 108 CCDS HistoryNCBI Gene:54897Re-query CCDS DB by CCDS ID:41246.1Re-query CCDS DB by GeneID:54897See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377022.8 ENSP00000366221.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377022.8Link to Ensembl Protein Viewer:ENSP00000366221.3Re-query CCDS DB by Nucleotide ID:ENST00000377022Re-query CCDS DB by Protein ID:ENSP00000366221
Original member Current member NCBI NM_001079843.3 NP_001073312.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079843.3Link to Protein Sequence:NP_001073312.1Re-query CCDS DB by Nucleotide ID:NM_001079843Re-query CCDS DB by Protein ID:NP_001073312Link to BLAST:NP_001073312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073312.1 1759 Q86V15-1 1759 100% 0 0

Chromosomal Locations for CCDS 41246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 10638942 10640059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10642859 10643000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10643160 10643311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10644917 10645088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10646128 10646326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10647801 10648139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10649070 10649192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10649283 10649437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10650692 10650755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10650941 10651076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10653377 10654218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10654419 10654591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10655649 10655813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10656646 10656736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10658508 10658576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10659702 10660536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10665083 10665571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10693874 10693889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5280 nt):
ATGGATCTTGGAACAGCTGAGGGCACCCGGTGCACGGACCCGCCTGCAGGCAAGCCCGCCATGGCGCCCA
AACGCAAGGGTGGCCTGAAGCTGAACGCCATCTGCGCCAAGCTGAGCCGCCAGGTGGTGGTGGAGAAGCG
AGCTGACGCCGGCTCCCACACGGAGGGCAGCCCATCGCAGCCCCGGGACCAAGAGCGCAGTGGCCCTGAG
TCTGGGGCAGCCCGGGCCCCCCGCAGCGAGGAAGACAAGAGACGGGCAGTGATCGAGAAGTGGGTGAACG
GGGAGTACAGCGAGGAGCCGGCACCCACACCCGTGTTGGGGCGGATTGCCCGCGAGGGCCTGGAGCTGCC
TCCCGAGGGTGTCTACATGGTGCAGCCCCAGGGGTGCAGCGATGAGGAAGACCACGCGGAGGAGCCCTCC
AAGGACGGCGGTGCCCTGGAGGAGAAGGATTCGGACGGGGCAGCCTCCAAGGAGGACAGCGGCCCCAGCA
CCAGGCAGGCTTCAGGAGAGGCCTCCTCGCTGCGGGACTACGCGGCCTCCACCATGACCGAGTTCCTCGG
CATGTTTGGCTATGATGACCAGAACACGCGGGACGAGCTGGCCAGGAAGATCAGCTTTGAGAAGCTGCAC
GCGGGCTCCACCCCGGAGGCAGCCACCTCCTCCATGCTGCCCACCTCCGAGGATACCCTCAGCAAGCGGG
CGCGGTTCTCTAAGTATGAGGAGTACATCCGCAAGCTCAAGGCTGGCGAGCAGCTCTCCTGGCCGGCCCC
CAGCACCAAGACCGAGGAGCGGGTGGGCAAGGAGGTGGTGGGCACCCTGCCCGGCCTGCGGCTGCCCAGC
AGCACGGCCCACCTGGAGACCAAGGCCACCATCCTGCCCCTGCCGTCGCACAGCAGTGTCCAGATGCAGA
ACCTGGTAGCCCGGGCCTCCAAGTACGACTTCTTCATCCAAAAACTGAAGACCGGCGAGAATCTGCGGCC
CCAGAACGGGAGCACCTACAAGAAGCCATCCAAGTACGACCTGGAGAATGTCAAGTACCTGCACCTCTTC
AAACCCGGGGAGGGCAGCCCCGACATGGGCGGGGCCATCGCCTTCAAGACAGGCAAGGTGGGGCGCCCTT
CCAAGTACGACGTCCGGGGCATCCAGAAGCCAGGCCCCGCCAAGGTTCCGCCCACCCCCAGCCTGGCTCC
CGCACCCCTCGCCAGCGTGCCCAGTGCCCCCAGCGCCCCCGGGCCAGGGCCAGAGCCTCCTGCCTCCCTG
TCCTTCAACACTCCCGAGTACCTGAAGTCAACCTTCTCCAAAACAGACTCCATCACCACGGGGACCGTCT
CCACTGTCAAGAACGGACTGCCCACAGATAAACCAGCCGTCACTGAAGATGTAAACATTTACCAGAAATA
TATTGCCAGGTTCTCGGGCAGCCAGCACTGTGGCCACATCCACTGTGCCTACCAGTACCGCGAGCACTAC
CACTGCCTTGACCCTGAGTGTAACTACCAGAGGTTCACGAGTAAGCAGGACGTGATCCGCCACTACAACA
TGCACAAGAAGCGCGACAACTCCCTGCAGCACGGCTTCATGCGTTTCAGCCCGCTGGACGACTGCAGCGT
CTACTACCACGGCTGCCACCTCAATGGGAAGAGCACCCACTATCACTGCATGCAGGTGGGCTGTAACAAG
GTGTACACGAGCACGTCTGACGTGATGACCCACGAGAACTTCCACAAGAAGAATACCCAGCTCATTAACG
ACGGCTTCCAGCGCTTCCGAGCCACCGAAGACTGTGGCACAGCCGACTGCCAGTTCTACGGACAGAAGAC
CACGCACTTCCACTGCAGGCGCCCCGGCTGCACATTCACTTTCAAGAACAAGTGTGACATCGAGAAGCAC
AAGAGCTACCACATCAAGGACGATGCCTACGCCAAGGACGGCTTCAAGAAGTTCTACAAGTACGAGGAGT
GCAAGTACGAGGGCTGCGTGTACAGCAAGGCTACCAACCACTTCCACTGCATCCGCGCCGGCTGCGGCTT
CACCTTCACCTCCACCAGCCAGATGACCTCTCACAAGCGCAAGCATGAGCGCCGGCACATCCGCTCCTCG
GGCGCGCTGGGGCTGCCGCCCTCGCTGCTGGGCGCCAAGGACACGGAGCACGAGGAGTCCAGCAACGACG
ACCTTGTTGACTTCTCCGCCCTGAGCAGCAAGAACTCCAGCCTGAGCGCCTCCCCTACCAGCCAGCAGTC
CTCTGCGTCCCTGGCTGCCGCCACTGCCGCCACCGAGGCTGGGCCCAGTGCCACCAAACCTCCCAACAGC
AAGATCTCGGGGCTGCTGCCCCAGGGCCTGCCTGGCTCAATCCCCCTGGCCCTGGCCCTCTCCAACTCGG
GCCTGCCCACCCCCACGCCCTACTTCCCCATACTGGCTGGCCGTGGGAGCACCTCCCTGCCTGTGGGCAC
CCCCAGCCTCCTGGGTGCCGTGTCGTCTGGGTCAGCAGCCTCAGCCACCCCTGACACACCCACGCTGGTC
GCCTCGGGAGCTGGAGACTCAGCCCCCGTGGCTGCCGCCTCTGTCCCGGCACCACCCGCCTCCATCATGG
AGAGGATCTCTGCAAGCAAGGGCCTCATCTCGCCCATGATGGCCAGGCTGGCTGCAGCTGCCCTCAAGCC
CTCTGCCACCTTTGACCCAGGAAGCGGGCAGCAGGTCACCCCAGCCAGGTTCCCCCCGGCCCAAGTGAAG
CCGGAACCCGGTGAGAGCACCGGCGCCCCAGGCCCCCACGAAGCCTCCCAGGACCGCAGTCTAGACCTGA
CTGTGAAGGAGCCCAGCAACGAATCAAATGGCCACGCAGTCCCGGCAAATTCATCTCTTTTATCCTCGCT
TATGAATAAGATGTCTCAGGGCAACCCTGGCCTGGGCAGCCTGCTGAACATCAAGGCGGAAGCGGAGGGG
AGCCCCGCTGCGGAGCCCTCGCCCTTCCTAGGCAAGGCCGTGAAGGCGCTGGTTCAGGAGAAGTTGGCAG
AGCCCTGGAAGGTGTACCTGCGCAGGTTTGGTACAAAGGACTTCTGTGACGGCCAGTGTGACTTCCTCCA
CAAGGCCCACTTCCACTGCGTGGTGGAGGAATGCGGCGCGCTCTTCAGCACCTTGGACGGGGCCATCAAG
CACGCAAACTTCCACTTCCGGACAGAGGGAGGAGCAGCAAAAGGAAACACAGAGGCTGCCTTTCCGGCCT
CGGCCGCCGAGACCAAACCTCCCATGGCCCCCTCGTCCCCTCCGGTCCCTCCTGTCACCACGGCCACGGT
GTCCTCTCTGGAGGGGCCCGCTCCCAGCCCGGCCTCCGTGCCCTCCACCCCCACCCTGCTCGCCTGGAAG
CAGCTGGCTTCCACCATACCCCAGATGCCTCAGATCCCAGCGTCAGTGCCTCACCTGCCCGCCTCGCCCT
TGGCAACGACTTCTCTAGAGAACGCCAAGCCCCAGGTCAAACCCGGATTCCTCCAGTTCCAGGAGAACGA
TCCTTGCCTCGCCACGGACTGCAAGTACGCCAACAAGTTCCACTTCCACTGTCTCTTTGGGAACTGCAAG
TACGTCTGCAAAACGTCTGGCAAGGCCGAATCCCACTGCCTGGACCACATCAACCCCAACAACAACCTGG
TGAACGTGCGAGACCAGTTTGCATACTACTCTCTGCAGTGTCTCTGTCCCAACCAGCACTGCGAGTTCCG
AATGCGTGGGCACTACCACTGCCTCCGCACCGGCTGCTATTTTGTGACCAACATCACCACCAAGCTCCCC
TGGCACATCAAGAAGCATGAGAAGGCGGAGCGGCGGGCAGCCAATGGCTTCAAATACTTCACCAAGCGCG
AGGAGTGTGGCAGGCTAGGTTGCAAGTACAACCAGGTGAACAGCCACTTCCACTGCATCCGGGAGGGCTG
CCAGTTCTCCTTCCTCCTCAAGCACCAGATGACCTCCCACGCGCGGAAGCACATGCGGAGGATGCTGGGG
AAGAACTTCGACCGCGTGCCCCCCTCCCAGGGCCCCCCAGGCCTGATGGATGCTGAGACAGATGAGTGCA
TGGACTACACTGGCTGCAGCCCAGGCGCCATGTCCTCTGAGTCATCCACCATGGACCGGAGCTGCTCCAG
CACCCCCGTGGGTAACGAGAGCACCGCGGCAGGGAACACCATCTCTATGCCGACAGCCTCGGGGGCCAAA
AAGCGCTTCTGGATCATCGAGGACATGTCGCCCTTCGGCAAGCGGCGGAAGACGGCGTCCTCCCGGAAGA
TGCTGGACGAGGGCATGATGCTGGAGGGCTTCCGGCGCTTCGACCTTTACGAGGACTGCAAGGACGCAGC
TTGTCAGTTCTCGCTCAAGGTCACCCACTACCACTGCACGCGCGAGAACTGCGGCTACAAGTTCTGCGGG
CGCACGCACATGTACAAGCACGCGCAGCACCACGACCGCGTGGACAACCTGGTGCTGGACGACTTCAAGC
GCTTCAAGGCCTCACTCAGCTGCCACTTCGCCGACTGCCCCTTCTCGGGCACCAGCACGCACTTCCACTG
CCTGCGCTGCCGCTTCCGCTGCACCGACAGCACCAAGGTCACGGCGCATCGCAAGCACCACGGCAAACAG
GACGTGATCAGCGCCGCGGGCTTCTGCCAGTTCAGCTCCAGCGCCGACTGCGCCGTGCCCGACTGCAAGT
ACAAGCTCAAGTGCTCGCACTTCCACTGCACCTTCCCGGGCTGCCGCCACACGGTGGTGGGCATGTCGCA
GATGGACTCGCACAAGCGCAAGCACGAGAAGCAGGAGCGCGGCGAGCCCGCGGCAGAGGGCCCCGCGCCC
GGGCCTCCCATCAGTCTGGACGGCTCCCTGTCGCTGGGCGCCGAGCCGGGCTCGCTGCTCTTCCTGCAGT
CGGCGGCCGCCGGCCTGGGCCTGGCGCTGGGCGACGCGGGCGACCCCGGCCCGCCCGACGCCGCCGCCCC
CGGGCCGCGCGAGGGCGCCGCCGCCGCCGCCGCCGCAGCTGGGGAGTCCTCGCAGGAGGACGAGGAGGAG
GAGCTGGAGCTGCCGGAGGAGGAGGCCGAAGACGACGAGGACGAGGACGACGACGAGGACGACGACGACG
AGGACGACGACGAGGACGACGACGACGAGGACCTGCGCACCGACTCGGAGGAGTCGCTGCCCGAGGCGGC
GGCGGAGGCGGCGGGCGCGGGCGCGCGGACCCCGGCCTTGGCGGCGCTGGCGGCCCTGGGCGCCCCCGGC
CCCGCGCCCACTGCAGCCTCCTCGCCCTAG

Translation (1759 aa):
MDLGTAEGTRCTDPPAGKPAMAPKRKGGLKLNAICAKLSRQVVVEKRADAGSHTEGSPSQPRDQERSGPE
SGAARAPRSEEDKRRAVIEKWVNGEYSEEPAPTPVLGRIAREGLELPPEGVYMVQPQGCSDEEDHAEEPS
KDGGALEEKDSDGAASKEDSGPSTRQASGEASSLRDYAASTMTEFLGMFGYDDQNTRDELARKISFEKLH
AGSTPEAATSSMLPTSEDTLSKRARFSKYEEYIRKLKAGEQLSWPAPSTKTEERVGKEVVGTLPGLRLPS
STAHLETKATILPLPSHSSVQMQNLVARASKYDFFIQKLKTGENLRPQNGSTYKKPSKYDLENVKYLHLF
KPGEGSPDMGGAIAFKTGKVGRPSKYDVRGIQKPGPAKVPPTPSLAPAPLASVPSAPSAPGPGPEPPASL
SFNTPEYLKSTFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHY
HCLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNK
VYTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIEKH
KSYHIKDDAYAKDGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRSS
GALGLPPSLLGAKDTEHEESSNDDLVDFSALSSKNSSLSASPTSQQSSASLAAATAATEAGPSATKPPNS
KISGLLPQGLPGSIPLALALSNSGLPTPTPYFPILAGRGSTSLPVGTPSLLGAVSSGSAASATPDTPTLV
ASGAGDSAPVAAASVPAPPASIMERISASKGLISPMMARLAAAALKPSATFDPGSGQQVTPARFPPAQVK
PEPGESTGAPGPHEASQDRSLDLTVKEPSNESNGHAVPANSSLLSSLMNKMSQGNPGLGSLLNIKAEAEG
SPAAEPSPFLGKAVKALVQEKLAEPWKVYLRRFGTKDFCDGQCDFLHKAHFHCVVEECGALFSTLDGAIK
HANFHFRTEGGAAKGNTEAAFPASAAETKPPMAPSSPPVPPVTTATVSSLEGPAPSPASVPSTPTLLAWK
QLASTIPQMPQIPASVPHLPASPLATTSLENAKPQVKPGFLQFQENDPCLATDCKYANKFHFHCLFGNCK
YVCKTSGKAESHCLDHINPNNNLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLP
WHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHARKHMRRMLG
KNFDRVPPSQGPPGLMDAETDECMDYTGCSPGAMSSESSTMDRSCSSTPVGNESTAAGNTISMPTASGAK
KRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRFDLYEDCKDAACQFSLKVTHYHCTRENCGYKFCG
RTHMYKHAQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQ
DVISAAGFCQFSSSADCAVPDCKYKLKCSHFHCTFPGCRHTVVGMSQMDSHKRKHEKQERGEPAAEGPAP
GPPISLDGSLSLGAEPGSLLFLQSAAAGLGLALGDAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEE
ELELPEEEAEDDEDEDDDEDDDDEDDDEDDDDEDLRTDSEESLPEAAAEAAGAGARTPALAALAALGAPG
PAPTAASSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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