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Report for CCDS38556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38556.1 Public Mus musculus 3 Ankrd34a 23 108 98 CCDS HistoryNCBI Gene:545554Re-query CCDS DB by CCDS ID:38556.1Re-query CCDS DB by GeneID:545554See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058943.7 ENSMUSP00000102707.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058943.7Link to Ensembl Protein Viewer:ENSMUSP00000102707.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058943Re-query CCDS DB by Protein ID:ENSMUSP00000102707
Original member NCBI NM_001024851.3 NP_001020022.2 Updated not alive Link to Nucleotide Sequence:NM_001024851.3Link to Protein Sequence:NP_001020022.2Re-query CCDS DB by Nucleotide ID:NM_001024851Re-query CCDS DB by Protein ID:NP_001020022
Current member NCBI NM_001024851.4 NP_001020022.2 Accepted alive Link to Nucleotide Sequence:NM_001024851.4Link to Protein Sequence:NP_001020022.2Re-query CCDS DB by Nucleotide ID:NM_001024851Re-query CCDS DB by Protein ID:NP_001020022Link to BLAST:NP_001020022.2

Chromosomal Locations for CCDS 38556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96597482 96598969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGCTGCACACCGAGGGCCACGCTCTTCTTCGAGCTGTGGGACAGGGTAAGCTACGCTTGGCCCGTTTGC
TTCTGGAGGGAGGAGCCTACGTGAATGAGGGTGATGCCCAGGGGGAGACTGCGCTAATGGCGGCCTGTAG
GGCCCGTTACGACGACCCTCAGAACAAGGCGCGCATGGTACGCTATCTCTTGGAGCAAGGCGCGGATCCC
AACATCGCAGACCGTTTAGGACGTACCGCGCTGATGCATGCTTGCGCCGGGGGTGGGGGAGCCGCAGTGG
CCTCTCTGCTCCTTGCCCACGGCGCAGACCCTTCAGTTCGAGATCACGCTGGCGCCTCGGCGCTTGTCCA
CGCCCTGGACCGAGGGGACCGCGAGACCCTTGCCACACTGCTGGACGCCTGCAAGGCCAAGGGCACGGAG
GTCATCATCATAACGACGGATACCTCGCCCTCGGGCACCAAGAAGACCAGGCAGTATCTTAATTCCCCAC
CGTCCCCAGGGGTAGAGGACCCTGCACCCGCTCCTCCTAGTCCAGGGGTCTGCACATCGCCTTCAGAAGT
CCAACTGCAGACTGCAGGAGGAGGGCGCGGGTTGTTATCCCCTCGCGCCCAGGAAGAAGAGGAGAAAAGA
GACATTTTTGAATTTCCTCTTCCCAAGCCCCCTGATGACCCTTCCCCTTCCGAGCCTCTCCCCAAGCCAC
CTCGACATCCTCCAAAACCACTCAAAAGGCTCAATTCCGAGCCCTGGGGCCTTGTGGCTCCTCCTCAACC
GGTTCCTCCTGCAGAAGGGAGGCCCGGTTTGGAGCGTCTGGCTGCTGAATTCAATGGCTTGACCCTGACC
GGGAGACCGCGTCTTTCTCGGCGTCACAGCACCGAAGGCCCGGAGGACCCGCCCCCATGGGCGGAGAAAG
TGACGGGTGGGGGTCCTCTCTCGCGCCGAAACACTGCGCCCGAGGCTCAGGAGTCTGGTCTTCCTTCAGG
GCTAAGGCAAAAACTGAGCCGCATGGAGCCGGTGGAGCTCGACACCCCTGGACATTTTTGCCCTGACTCC
CCCGAGTCCAGCCGGTTATCCCTGGAGCGCCGGCGATACAGCGCCTCTCCGCTGACCCTCCCTCCAGCGG
GCTCAGTTTCCTCCCCACGCCAGTCCCAGGAAAGTCTGCCCGGGGCTGTATCCCCGCTGAGCGGACGGAG
GCGGAGTCCAGGGCTGCTAGAGAGAAGGGGCTCCGGGACCTTGCTCCTGGACCACATCTCGCAAACACGA
CCAGGTTTCTTGCCTCCTCTCAACGTCAGTCCCCACCCTCCCATCCCCGACATTCGTCCCCAACCCGGAG
GTCGGGCACCCTCACTGCCTGCCCCTCCACCCTCTGGGGCACCAGGGTCTCCCAGGACCAAGCGCAAGTT
GGTGAGACGCCACTCCATGCAGACTGAGCAGATTCGCCTGCTAGGGGGGTTTCAGAGTCTAGGTGGGCCT
GGGGAACCCGGGCGCTGA

Translation (495 aa):
MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQNKARMVRYLLEQGADP
NIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGASALVHALDRGDRETLATLLDACKAKGTE
VIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPAPPSPGVCTSPSEVQLQTAGGGRGLLSPRAQEEEEKR
DIFEFPLPKPPDDPSPSEPLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPAEGRPGLERLAAEFNGLTLT
GRPRLSRRHSTEGPEDPPPWAEKVTGGGPLSRRNTAPEAQESGLPSGLRQKLSRMEPVELDTPGHFCPDS
PESSRLSLERRRYSASPLTLPPAGSVSSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQTR
PGFLPPLNVSPHPPIPDIRPQPGGRAPSLPAPPPSGAPGSPRTKRKLVRRHSMQTEQIRLLGGFQSLGGP
GEPGR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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