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Report for CCDS11126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11126.1 Public Homo sapiens 17 CNTROB 24 110 108 CCDS HistoryNCBI Gene:116840Re-query CCDS DB by CCDS ID:11126.1Re-query CCDS DB by GeneID:116840See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11126.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563694.6 ENSP00000456335.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563694.6Link to Ensembl Protein Viewer:ENSP00000456335.1Re-query CCDS DB by Nucleotide ID:ENST00000563694Re-query CCDS DB by Protein ID:ENSP00000456335
Original member Current member NCBI NM_001353203.2 NP_001340132.1 Accepted alive Link to Nucleotide Sequence:NM_001353203.2Link to Protein Sequence:NP_001340132.1Re-query CCDS DB by Nucleotide ID:NM_001353203Re-query CCDS DB by Protein ID:NP_001340132Link to BLAST:NP_001340132.1
Original member Current member NCBI NM_001353207.1 NP_001340136.1 Accepted alive Link to Nucleotide Sequence:NM_001353207.1Link to Protein Sequence:NP_001340136.1Re-query CCDS DB by Nucleotide ID:NM_001353207Re-query CCDS DB by Protein ID:NP_001340136Link to BLAST:NP_001340136.1
Original member Current member NCBI NM_053051.5 NP_444279.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053051.5Link to Protein Sequence:NP_444279.2Re-query CCDS DB by Nucleotide ID:NM_053051Re-query CCDS DB by Protein ID:NP_444279Link to BLAST:NP_444279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340132.1 903 Q8N137-1 903 100% 0 0
NP_001340136.1 903 Q8N137-1 903 100% 0 0
NP_444279.2 903 Q8N137-1 903 100% 0 0

Chromosomal Locations for CCDS 11126.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7933080 7933349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7934138 7934222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7934465 7934546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7934989 7935145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7936366 7936482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7936701 7936817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7937164 7937262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7939513 7939749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7940096 7940242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7943391 7943524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7944123 7944248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7944476 7944638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7945728 7945986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7947571 7947722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7947916 7947979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7948157 7948327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7948487 7948619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7949085 7949157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7949385 7949510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGGCAACATCAGCTGACAGCCCCAGTTCACCCCTCGGGGCGGAGGATCTCCTGAGTGATTCATCAGAAC
CCCCTGGGCTCAACCAAGTGTCGTCTGAAGTGACCTCCCAGCTCTATGCTTCTTTGCGCCTCAGCCGGCA
GGCGGAGGCCACGGCCCGAGCCCAGCTGTATTTACCCTCCACCTCCCCGCCTCATGAAGGGTTAGACGGC
TTCGCCCAAGAATTGAGTCGAAGCTTGTCAGTCGGATTGGAAAAGAACTTGAAGAAAAAGGATGGTTCTA
AGCATATCTTTGAGATGGAAAGTGTTCGGGGTCAGCTCCAGACCATGCTCCAAACCTCACGTGATACAGC
CTATCGGGATCCTCTCATTCCTGGCGCTGGCTCAGAGAGACGGGAAGAGGACTCCTTTGACAGTGATAGC
ACAGCCACCTTGCTCAACACCCGGCCCCTGCAAGACTTGTCTCCATCTAGCTCAGCCCAAGCCCTGGAGG
AGCTGTTTCCCCGCTACACCAGCCTTCGGCCAGGGCCTCCACTCAATCCCCCAGATTTTCAGGGGCTGAG
AGATGCATTGGATTCAGAGCATACCCGCCGCAAGCATTGTGAGCGCCATATTCAGAGCCTGCAGACCCGA
GTGTTAGAGCTACAGCAACAATTAGCCGTGGCTGTGGCTGCCGACCGCAAGAAAGATACCATGATTGAAC
AACTGGACAAGACCCTGGCCCGTGTGGTGGAGGGCTGGAACCGGCATGAGGCTGAGCGGACAGAGGTTCT
CAGGGGACTTCAAGAGGAACACCAGGCAGCAGAGCTCACCAGAAGCAAGCAGCAGGAGACAGTAACCCGC
CTGGAACAAAGCCTTTCTGAGGCCATGGAGGCCCTGAATCGTGAGCAGGAAAGTGCCAGACTGCAGCAAC
GGGAAAGAGAGACACTGGAGGAGGAAAGGCAAGCTCTGACTCTGAGGTTGGAGGCAGAACAGCAGCGGTG
CTGTGTCCTGCAGGAAGAGCGGGATGCAGCTCGGGCTGGGCAACTGAGTGAGCATCGAGAGTTGGAGACT
CTTCGGGCTGCCCTAGAAGAAGAACGGCAGACCTGGGCCCAGCAAGAGCACCAGCTTAAGGAACACTACC
AGGCGCTGCAGGAGGAGAGCCAGGCTCAGCTGGAAAGGGAGAAGGAGAAGAGCCAGAGGGAAGCCCAGGC
CGCCTGGGAGACCCAGCACCAGTTGGCATTGGTGCAGTCTGAGGTGCGGCGGCTGGAAGGAGAGCTGGAT
ACAGCTCGGAGAGAGAGAGATGCCCTGCAGCTGGAAATGAGCTTGGTGCAGGCCCGGTATGAAAGCCAGC
GGATCCAGCTGGAGTCGGAGCTGGCTGTGCAGCTGGAGCAGCGGGTGACAGAGCGGCTGGCGCAGGCTCA
GGAGAGCAGCCTACGGCAAGCAGCCTCCCTCAGGGAACATCACAGGAAGCAGCTGCAGGACCTGAGTGGA
CAGCACCAGCAGGAGCTGGCCAGTCAGCTAGCTCAGTTCAAGGTGGAAATGGCAGAACGAGAGGAACGGC
AACAGCAGGTGGCTGAGGACTACGAGCTCAGACTGGCCCGGGAGCAAGCGCGAGTGTGCGAACTGCAGAG
TGGGAACCAGCAGCTGGAGGAGCAGCGGGTGGAGCTGGTGGAAAGACTGCAGGCCATGCTGCAGGCCCAC
TGGGATGAGGCCAACCAGCTGCTCAGCACCACTCTCCCGCCGCCCAACCCTCCAGCTCCTCCTGCTGGAC
CCTCCAGCCCCGGGCCTCAGGAGCCCGAGAAGGAGGAGAGGAGGGTCTGGACTATGCCTCCCATGGCCGT
GGCCCTGAAGCCTGTATTGCAGCAGAGCCGGGAAGCAAGGGACGAGCTACCTGGAGCGCCTCCTGTTCTT
TGCAGTTCCTCCTCAGATCTTAGCCTCCTGTTGGGCCCCTCTTTTCAGAGCCAGCATTCTTTCCAGCCCC
TGGAGCCCAAACCAGACCTCACTTCATCCACAGCTGGGGCCTTCTCTGCACTTGGGGCCTTCCATCCCGA
TCATAGGGCAGAAAGGCCATTCCCTGAGGAAGATCCTGGACCTGACGGGGAGGGCCTCCTAAAGCAAGGG
CTGCCGCCTGCTCAGCTGGAGGGCCTCAAGAATTTTTTGCACCAGTTGCTGGAGACAGTGCCCCAGAACA
ATGAGAACCCTTCTGTCGACCTGTTGCCCCCTAAGTCTGGTCCTCTGACTGTCCCATCTTGGGAGGAAGC
CCCTCAAGTGCCACGTATTCCACCGCCTGTCCACAAAACCAAAGTTCCCTTAGCCATGGCATCCAGTCTT
TTCCGGGTCCCTGAGCCTCCCTCCTCCCATTCACAAGGCAGTGGTCCCAGCAGTGGTTCCCCAGAGAGAG
GTGGAGATGGGCTTACATTCCCAAGGCAGCTGATGGAGGTGTCTCAACTGTTGCGACTCTACCAGGCTCG
GGGCTGGGGGGCTCTGCCTGCTGAGGATCTCCTGCTCTACCTGAAGAGGCTGGAACACAGCGGGACTGAT
GGCCGAGGGGATAATGTCCCCAGAAGGAACACAGACTCCCGCTTGGGTGAGATCCCCCGGAAAGAGATTC
CCTCCCAGGCTGTCCCTCGCCGCCTTGCTACAGCCCCCAAGACTGAAAAACCTCCCGCACGGAAGAAAAG
TGGGCACCCTGCCCCGAGTAGCATGAGGAGCCGGGGGGGAGTCTGGAGATGA

Translation (903 aa):
MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPSTSPPHEGLDG
FAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRDPLIPGAGSERREEDSFDSDS
TATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNPPDFQGLRDALDSEHTRRKHCERHIQSLQTR
VLELQQQLAVAVAADRKKDTMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTR
LEQSLSEAMEALNREQESARLQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELET
LRAALEEERQTWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREHHRKQLQDLSG
QHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQQLEEQRVELVERLQAMLQAH
WDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEKEERRVWTMPPMAVALKPVLQQSREARDELPGAPPVL
CSSSSDLSLLLGPSFQSQHSFQPLEPKPDLTSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQG
LPPAQLEGLKNFLHQLLETVPQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSL
FRVPEPPSSHSQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGTD
GRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKTEKPPARKKSGHPAPSSMRSRGGVWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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