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Report for CCDS9126.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9126.2 Public Homo sapiens 12 FOXN4 24 110 108 CCDS HistoryNCBI Gene:121643Re-query CCDS DB by CCDS ID:9126.2See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 9126.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an N-terminus extension that is better supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9126.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299162.10 ENSP00000299162.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299162.10Link to Ensembl Protein Viewer:ENSP00000299162.5Re-query CCDS DB by Nucleotide ID:ENST00000299162Re-query CCDS DB by Protein ID:ENSP00000299162
Original member Current member NCBI NM_213596.3 NP_998761.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213596.3Link to Protein Sequence:NP_998761.2Re-query CCDS DB by Nucleotide ID:NM_213596Re-query CCDS DB by Protein ID:NP_998761Link to BLAST:NP_998761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998761.2 517 Q96NZ1-1 517 100% 0 0

Chromosomal Locations for CCDS 9126.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109279671 109279930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109281407 109281799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109285304 109285511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109286648 109286744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109287397 109287524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109287844 109287954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109288056 109288180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109290141 109290286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109308236 109308321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGATAGAAAGTGACACCTCATCCATAATGTCAGGAATTATTCGAAACTCAGGGCAAAATCACCACCCCT
CTCCACAGGAATACAGGCTTCTAGCCACCACCAGCGATGATGACCTTCCCGGGGACCTGCAGTCGCTGTC
GTGGCTCACGGCGGTGGATGTGCCTCGGCTGCAGCAGATGGCAAGTGGCCGCGTGGACCTGGGTGGCCCC
TGCGTGCCACATCCACACCCAGGTGCCTTGGCTGGGGTGGCCGACCTGCATGTGGGAGCCACTCCAAGTC
CCCTTCTCCATGGCCCAGCAGGCATGGCCCCCCGAGGCATGCCAGGTCTGGGCCCCATAACTGGCCACAG
AGACAGCATGAGCCAGTTCCCCGTGGGGGGCCAGCCCTCATCTGGCCTGCAGGACCCGCCGCATCTGTAC
TCACCTGCCACCCAACCACAGTTCCCGCTCCCCCCGGGTGCCCAGCAGTGCCCTCCTGTGGGCCTCTATG
GCCCCCCATTTGGGGTGCGGCCCCCCTACCCCCAGCCCCACGTGGCTGTGCATTCATCTCAAGAACTGCA
CCCCAAACACTACCCCAAGCCCATCTACTCGTACAGCTGTCTGATCGCCATGGCCCTGAAGAACAGCAAG
ACAGGCAGCCTGCCTGTGAGCGAGATCTACAGCTTCATGAAGGAGCACTTCCCCTACTTCAAGACGGCCC
CCGACGGGTGGAAGAACTCGGTGCGGCACAACCTGTCTCTGAACAAGTGCTTCGAGAAGGTGGAGAACAA
GATGAGCGGCTCCTCCCGCAAGGGCTGCCTGTGGGCTCTGAACCTGGCCCGCATCGACAAGATGGAGGAG
GAGATGCACAAGTGGAAGAGGAAGGACCTGGCTGCCATCCACCGGAGTATGGCCAACCCTGAGGAGTTGG
ACAAGCTGATCTCCGACCGGCCTGAAAGCTGCCGGCGCCCCGGCAAACCGGGGGAACCAGAGGCCCCCGT
GCTGACTCACGCCACCACAGTGGCCGTGGCGCATGGCTGCCTGGCTGTCTCCCAGCTCCCACCCCAGCCA
CTGATGACCCTGTCCCTGCAGTCAGTCCCCCTGCACCACCAGGTCCAGCCCCAGGCACATCTTGCTCCAG
ACTCTCCAGCACCAGCCCAGACCCCGCCACTGCACGCCCTGCCGGACCTCAGCCCCAGCCCGCTCCCCCA
CCCCGCCATGGGAAGGGCTCCTGTAGACTTCATCAACATCAGCACCGACATGAACACTGAGGTGGATGCC
CTCGACCCGAGCATCATGGACTTCGCTCTGCAGGGGAACCTGTGGGAGGAGATGAAGGATGAGGGATTCA
GCTTGGACACACTGGGCGCCTTTGCAGACTCCCCGCTTGGCTGTGACCTGGGGGCCTCAGGCCTAACCCC
TGCCTCGGGTGGCAGCGACCAGTCCTTCCCAGACTTGCAGGTGACGGGTCTCTACACAGCGTACTCCACT
CCGGACAGTGTGGCTGCATCGGGCACCAGCTCCTCCTCCCAGTACCTGGGTGCACAGGGGAACAAGCCTA
TAGCCCTGCTTTGA

Translation (517 aa):
MIESDTSSIMSGIIRNSGQNHHPSPQEYRLLATTSDDDLPGDLQSLSWLTAVDVPRLQQMASGRVDLGGP
CVPHPHPGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSMSQFPVGGQPSSGLQDPPHLY
SPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKHYPKPIYSYSCLIAMALKNSK
TGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLARIDKMEE
EMHKWKRKDLAAIHRSMANPEELDKLISDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQP
LMTLSLQSVPLHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTEVDA
LDPSIMDFALQGNLWEEMKDEGFSLDTLGAFADSPLGCDLGASGLTPASGGSDQSFPDLQVTGLYTAYST
PDSVAASGTSSSSQYLGAQGNKPIALL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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