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Report for CCDS9363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9363.1 Public Homo sapiens 13 CSNK1A1L 24 110 108 CCDS HistoryNCBI Gene:122011Re-query CCDS DB by CCDS ID:9363.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9363.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379800.4 ENSP00000369126.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379800.4Link to Ensembl Protein Viewer:ENSP00000369126.3Re-query CCDS DB by Nucleotide ID:ENST00000379800Re-query CCDS DB by Protein ID:ENSP00000369126
Original member Current member NCBI NM_145203.6 NP_660204.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145203.6Link to Protein Sequence:NP_660204.2Re-query CCDS DB by Nucleotide ID:NM_145203Re-query CCDS DB by Protein ID:NP_660204Link to BLAST:NP_660204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660204.2 337 Q8N752 337 100% 0 0

Chromosomal Locations for CCDS 9363.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 37104243 37105256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGACAAACAACAGCGGCTCCAAAGCCGAACTCGTTGTGGGAGGGAAATACAAACTGGTGCGGAAGATCG
GGTCTGGCTCCTTTGGAGACGTTTATCTGGGCATCACCACCACCAACGGCGAGGACGTAGCAGTGAAGCT
GGAATCTCAGAAGGTCAAGCACCCCCAGTTGCTGTATGAGAGCAAACTCTACACGATTCTTCAAGGTGGG
GTTGGCATCCCCCACATGCACTGGTATGGTCAGGAAAAAGACAACAATGTGCTAGTCATGGACCTTCTGG
GACCCAGCCTCGAAGACCTCTTTAATTTCTGTTCAAGAAGGTTCACCATGAAAACTGTACTTATGTTAGC
CGACCAGATGATCAGCAGAATTGAATACGTGCATACAAAGAATTTTCTACACCGAGACATTAAACCAGAT
AACTTCCTGATGGGTACTGGGCGTCACTGTAATAAGTTGTTCCTTATTGATTTTGGTTTGGCCAAAAAGT
ACAGAGACAACAGGACCAGGCAACACATACCGTACAGAGAAGATAAACACCTCATTGGCACTGTCCGATA
TGCCAGCATCAATGCACATCTTGGTATTGAGCAGAGCCGCCGAGATGACATGGAATCCTTAGGCTACGTT
TTCATGTATTTTAATAGAACCAGCCTGCCGTGGCAAGGACTAAGGGCTATGACAAAAAAACAAAAATATG
AAAAGATTAGTGAGAAGAAGATGTCCACCCCTGTTGAAGTTTTATGTAAGGGGTTTCCTGCAGAATTCGC
CATGTACTTGAACTACTGTCGTGGGCTGCGCTTTGAGGAAGTCCCAGATTACATGTATCTGAGGCAGCTA
TTCCGCATTCTTTTCAGGACCCTGAACCACCAATATGACTACACATTTGATTGGACGATGTTAAAGCAGA
AAGCAGCACAGCAGGCAGCCTCTTCCAGTGGGCAGGGTCAGCAGGCCCAAACCCAGACAGGCAAGCAAAC
TGAAAAAAACAAGAATAATGTGAAAGATAACTAA

Translation (337 aa):
MTNNSGSKAELVVGGKYKLVRKIGSGSFGDVYLGITTTNGEDVAVKLESQKVKHPQLLYESKLYTILQGG
VGIPHMHWYGQEKDNNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFLHRDIKPD
NFLMGTGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKHLIGTVRYASINAHLGIEQSRRDDMESLGYV
FMYFNRTSLPWQGLRAMTKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEVPDYMYLRQL
FRILFRTLNHQYDYTFDWTMLKQKAAQQAASSSGQGQQAQTQTGKQTEKNKNNVKDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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