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Report for CCDS34507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34507.1 Public Homo sapiens 6 BEND3 24 110 108 CCDS HistoryNCBI Gene:57673Re-query CCDS DB by CCDS ID:34507.1Re-query CCDS DB by GeneID:57673See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369042.6 ENSP00000358038.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369042.6Link to Ensembl Protein Viewer:ENSP00000358038.1Re-query CCDS DB by Nucleotide ID:ENST00000369042Re-query CCDS DB by Protein ID:ENSP00000358038
Original member Current member EBI ENST00000429433.3 ENSP00000411268.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429433.3Link to Ensembl Protein Viewer:ENSP00000411268.2Re-query CCDS DB by Nucleotide ID:ENST00000429433Re-query CCDS DB by Protein ID:ENSP00000411268
Original member Current member NCBI NM_001080450.3 NP_001073919.1 Accepted alive Link to Nucleotide Sequence:NM_001080450.3Link to Protein Sequence:NP_001073919.1Re-query CCDS DB by Nucleotide ID:NM_001080450Re-query CCDS DB by Protein ID:NP_001073919Link to BLAST:NP_001073919.1
Original member Current member NCBI NM_001367314.1 NP_001354243.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367314.1Link to Protein Sequence:NP_001354243.1Re-query CCDS DB by Nucleotide ID:NM_001367314Re-query CCDS DB by Protein ID:NP_001354243Link to BLAST:NP_001354243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073919.1 828 Q5T5X7 828 100% 0 0
NP_001354243.1 828 Q5T5X7 828 100% 0 0

Chromosomal Locations for CCDS 34507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107068704 107070950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107098551 107098753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107099249 107099285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAACTCAACTGAATTCACCGAAGATGTAGAAGAAGTTCTAAAAAGTATCACTGTGAAAGTGGAGACAG
AGGCTGAAGATGCTGCTCTGGACTGCTCCGTGAATTCCAGGACTTCTGAGAAGCACTCTGTGGACAGCGT
CCTCACTGCCCTGCAGGACTCCAGCAAACGAAAGCAGCTGGTCAGCGATGGCCTGCTAGACTCTGTCCCC
GGCGTGAAGAGGAGGCGGCTGATCCCCGAGGCTCTCCTAGCAGGCATGCGGAACCGTGAGAACAGCTCGC
CCTGCCAAGGCAATGGTGAGCAGGCCGGCAGGGGCAGGAGCCTGGGCAATGTGTGGCCTGGAGAGGAGGA
GCCCTGCAACGATGCCACCACCCCTTCCTACAAGAAGCCTCTGTATGGCATCTCGCACAAGATCATGGAG
AAGAAGAATCCTCCCTCGGGGGACCTGCTAAACGTGTACGAGCTCTTTGAGAAGGCAAACGCCAGCAACA
GCCCCTCGTCACTGCGGCTCCTGAATGAGCCACAGAAGCGGGACTGTGGCAGCACCGGGGCAGGCACTGA
CAACGACCCCAACATCTACTTCCTGATCCAGAAGATGTTCTACATGCTGAACACCCTCACGTCCAACATG
TCCCAGCTGCACAGCAAGGTGGACCTGCTCTCCCTTGAGGTGAGCCGCATCAAGAAGCAGGTGAGCCCCA
CTGAGATGGTGGCCAAATTCCAGCCGCCCCCTGAGTACCAGCTCACAGCCGCAGAGCTCAAGCAGATCGT
GGACCAGAGCCTGTCAGGGGGGGACCTGGCCTGCCGCTTGCTGGTGCAGCTCTTCCCCGAGCTCTTCAGC
GACGTGGACTTCTCCCGGGGCTGCAGTGCCTGTGGCTTTGCGGCCAAGCGCAAGCTGGAGTCGCTGCACC
TGCAGCTCATCCGCAACTATGTGGAGGTCTACTACCCCTCGGTGAAGGACACGGCTGTGTGGCAGGCCGA
GTGCCTGCCCCAGCTGAACGACTTCTTCAGCCGCTTCTGGGCCCAGCGGGAAATGGAGGACAGCCAGCCC
AGCGGCCAGGTCGCCAGCTTCTTTGAGGCAGAGCAGGTGGACCCCGGCCACTTCCTGGACAACAAAGACC
AGGAGGAGGCCCTGTCTCTTGACCGGAGCAGCACCATCGCCTCAGACCACGTGGTGGACACGCAGGACCT
CACTGAGTTCCTGGACGAAGCCTCCTCACCAGGCGAGTTTGCCGTCTTCCTCCTCCACCGGCTCTTCCCC
GAGCTCTTCGACCACCGCAAGCTGGGTGAACAGTACAGCTGCTACGGGGACGGTGGAAAGCAGGAGCTGG
ACCCGCAGCGGCTGCAGATCATCCGCAACTACACGGAGATCTACTTCCCTGACATGCAGGAGGAGGAGGC
CTGGCTGCAGCAGTGTGCCCAGCGCATCAACGACGAGCTCGAGGGCCTGGGGCTGGACGCGGGCAGTGAA
GGCGACCCCCCGCGTGATGACTGCTACGACTCCTCCAGTCTGCCCGACGACATCTCAGTGGTCAAGGTGG
AGGACAGCTTCGAGGGCGAGCGGCCGGGTCGCCGCTCCAAGAAGATCTGGCTGGTGCCCATCGACTTCGA
CAAGTTAGAGATCCCCCAGCCTGACTTCGAGGTGCCCGGTGCCGACTGCCTGCTCAGCAAGGAGCAGCTA
CGCAGCATCTACGAGAGCAGCCTGTCCATCGGCAACTTCGCCTCGCGCCTGCTGGTGCACCTGTTCCCCG
AGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCCCTGGGCAAGAAGCAGCTGGA
CCCCTCCCGCATCAAGCTCATCCGCCACTACGTGCAGCTGCTCTACCCACGCGCCAAAAACGACCGCGTC
TGGACCCTGGAGTTCGTGGGCAAACTGGATGAGCGCTGCCGGCGCCGGGACACGGAGCAAAGGCGCTCCT
ACCAGCAGCAGCGCAAGGTCCACGTGCCGGGCCCTGAGTGCAGAGACTTGACCAGCTATGCAATCAACCC
CGAGAGGTTCCGGGAGGAGTTTGAGGGGCCCCCACTGCCCCCCGAGAGGAGCAGCAAGGACTTTTGCAAG
ATCCCCTTGGACGAGCTGGTGGTCCCCTCGCCTGACTTCCCGGTGCCTTCTCCCTACCTGCTGTCTGACA
AGGAGGTGCGTGAGATCGTGCAGCAGAGCCTCTCCGTGGGCAACTTTGCCGCCCGGCTCCTCGTCCGCCT
GTTTCCCGAACTCTTCACCGCCGAGAACCTCCGGCTGCAGTACAACCATTCCGGGGCTTGCAACAAGAAG
CAACTGGACCCCACGCGGCTGCGGCTCATCCGCCACTACGTGGAAGCCGTCTACCCGGTGGAGAAGATGG
AGGAGGTGTGGCACTACGAATGTATCCCCAGCATCGATGAGAGGTGCCGCCGCCCCAACAGGAAAAAATG
CGACATCCTCAAGAAAGCAAAGAAAGTGGAGAAGTGA

Translation (828 aa):
MNSTEFTEDVEEVLKSITVKVETEAEDAALDCSVNSRTSEKHSVDSVLTALQDSSKRKQLVSDGLLDSVP
GVKRRRLIPEALLAGMRNRENSSPCQGNGEQAGRGRSLGNVWPGEEEPCNDATTPSYKKPLYGISHKIME
KKNPPSGDLLNVYELFEKANASNSPSSLRLLNEPQKRDCGSTGAGTDNDPNIYFLIQKMFYMLNTLTSNM
SQLHSKVDLLSLEVSRIKKQVSPTEMVAKFQPPPEYQLTAAELKQIVDQSLSGGDLACRLLVQLFPELFS
DVDFSRGCSACGFAAKRKLESLHLQLIRNYVEVYYPSVKDTAVWQAECLPQLNDFFSRFWAQREMEDSQP
SGQVASFFEAEQVDPGHFLDNKDQEEALSLDRSSTIASDHVVDTQDLTEFLDEASSPGEFAVFLLHRLFP
ELFDHRKLGEQYSCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWLQQCAQRINDELEGLGLDAGSE
GDPPRDDCYDSSSLPDDISVVKVEDSFEGERPGRRSKKIWLVPIDFDKLEIPQPDFEVPGADCLLSKEQL
RSIYESSLSIGNFASRLLVHLFPELFTHENLRKQYNCSGSLGKKQLDPSRIKLIRHYVQLLYPRAKNDRV
WTLEFVGKLDERCRRRDTEQRRSYQQQRKVHVPGPECRDLTSYAINPERFREEFEGPPLPPERSSKDFCK
IPLDELVVPSPDFPVPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTAENLRLQYNHSGACNKK
QLDPTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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