NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6010.1 Public Homo sapiens 8 CSGALNACT1 24 110 108 CCDS HistoryNCBI Gene:55790Re-query CCDS DB by CCDS ID:6010.1Re-query CCDS DB by GeneID:55790See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6010.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332246.10 ENSP00000330805.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332246.10Link to Ensembl Protein Viewer:ENSP00000330805.6Re-query CCDS DB by Nucleotide ID:ENST00000332246Re-query CCDS DB by Protein ID:ENSP00000330805
Original member Current member EBI ENST00000454498.6 ENSP00000411816.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454498.6Link to Ensembl Protein Viewer:ENSP00000411816.2Re-query CCDS DB by Nucleotide ID:ENST00000454498Re-query CCDS DB by Protein ID:ENSP00000411816
Original member Current member EBI ENST00000522854.5 ENSP00000429809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522854.5Link to Ensembl Protein Viewer:ENSP00000429809.1Re-query CCDS DB by Nucleotide ID:ENST00000522854Re-query CCDS DB by Protein ID:ENSP00000429809
Original member Current member EBI ENST00000692225.2 ENSP00000509853.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692225.2Link to Ensembl Protein Viewer:ENSP00000509853.1Re-query CCDS DB by Nucleotide ID:ENST00000692225Re-query CCDS DB by Protein ID:ENSP00000509853
Original member Current member EBI ENST00000695892.1 ENSP00000512242.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695892.1Link to Ensembl Protein Viewer:ENSP00000512242.1Re-query CCDS DB by Nucleotide ID:ENST00000695892Re-query CCDS DB by Protein ID:ENSP00000512242
Original member Current member EBI ENST00000695893.1 ENSP00000512243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695893.1Link to Ensembl Protein Viewer:ENSP00000512243.1Re-query CCDS DB by Nucleotide ID:ENST00000695893Re-query CCDS DB by Protein ID:ENSP00000512243
Original member Current member EBI ENST00000695894.1 ENSP00000512244.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695894.1Link to Ensembl Protein Viewer:ENSP00000512244.1Re-query CCDS DB by Nucleotide ID:ENST00000695894Re-query CCDS DB by Protein ID:ENSP00000512244
Original member Current member EBI ENST00000695895.1 ENSP00000512245.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695895.1Link to Ensembl Protein Viewer:ENSP00000512245.1Re-query CCDS DB by Nucleotide ID:ENST00000695895Re-query CCDS DB by Protein ID:ENSP00000512245
Original member Current member EBI ENST00000695896.1 ENSP00000512246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695896.1Link to Ensembl Protein Viewer:ENSP00000512246.1Re-query CCDS DB by Nucleotide ID:ENST00000695896Re-query CCDS DB by Protein ID:ENSP00000512246
Original member Current member EBI ENST00000695897.1 ENSP00000512247.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695897.1Link to Ensembl Protein Viewer:ENSP00000512247.1Re-query CCDS DB by Nucleotide ID:ENST00000695897Re-query CCDS DB by Protein ID:ENSP00000512247
Original member Current member EBI ENST00000695898.1 ENSP00000512248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695898.1Link to Ensembl Protein Viewer:ENSP00000512248.1Re-query CCDS DB by Nucleotide ID:ENST00000695898Re-query CCDS DB by Protein ID:ENSP00000512248
Original member Current member NCBI NM_001130518.2 NP_001123990.1 Accepted alive Link to Nucleotide Sequence:NM_001130518.2Link to Protein Sequence:NP_001123990.1Re-query CCDS DB by Nucleotide ID:NM_001130518Re-query CCDS DB by Protein ID:NP_001123990Link to BLAST:NP_001123990.1
Original member Current member NCBI NM_001354475.2 NP_001341404.1 Accepted alive Link to Nucleotide Sequence:NM_001354475.2Link to Protein Sequence:NP_001341404.1Re-query CCDS DB by Nucleotide ID:NM_001354475Re-query CCDS DB by Protein ID:NP_001341404Link to BLAST:NP_001341404.1
Original member Current member NCBI NM_001354476.2 NP_001341405.1 Accepted alive Link to Nucleotide Sequence:NM_001354476.2Link to Protein Sequence:NP_001341405.1Re-query CCDS DB by Nucleotide ID:NM_001354476Re-query CCDS DB by Protein ID:NP_001341405Link to BLAST:NP_001341405.1
Original member Current member NCBI NM_001354477.2 NP_001341406.1 Accepted alive Link to Nucleotide Sequence:NM_001354477.2Link to Protein Sequence:NP_001341406.1Re-query CCDS DB by Nucleotide ID:NM_001354477Re-query CCDS DB by Protein ID:NP_001341406Link to BLAST:NP_001341406.1
Original member Current member NCBI NM_001354480.2 NP_001341409.1 Accepted alive Link to Nucleotide Sequence:NM_001354480.2Link to Protein Sequence:NP_001341409.1Re-query CCDS DB by Nucleotide ID:NM_001354480Re-query CCDS DB by Protein ID:NP_001341409Link to BLAST:NP_001341409.1
Original member Current member NCBI NM_001354481.2 NP_001341410.1 Accepted alive Link to Nucleotide Sequence:NM_001354481.2Link to Protein Sequence:NP_001341410.1Re-query CCDS DB by Nucleotide ID:NM_001354481Re-query CCDS DB by Protein ID:NP_001341410Link to BLAST:NP_001341410.1
Original member Current member NCBI NM_001354483.2 NP_001341412.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354483.2Link to Protein Sequence:NP_001341412.1Re-query CCDS DB by Nucleotide ID:NM_001354483Re-query CCDS DB by Protein ID:NP_001341412Link to BLAST:NP_001341412.1
Original member Current member NCBI NM_001354484.2 NP_001341413.1 Accepted alive Link to Nucleotide Sequence:NM_001354484.2Link to Protein Sequence:NP_001341413.1Re-query CCDS DB by Nucleotide ID:NM_001354484Re-query CCDS DB by Protein ID:NP_001341413Link to BLAST:NP_001341413.1
Original member Current member NCBI NM_001354485.2 NP_001341414.1 Accepted alive Link to Nucleotide Sequence:NM_001354485.2Link to Protein Sequence:NP_001341414.1Re-query CCDS DB by Nucleotide ID:NM_001354485Re-query CCDS DB by Protein ID:NP_001341414Link to BLAST:NP_001341414.1
Original member Current member NCBI NM_001354487.2 NP_001341416.1 Accepted alive Link to Nucleotide Sequence:NM_001354487.2Link to Protein Sequence:NP_001341416.1Re-query CCDS DB by Nucleotide ID:NM_001354487Re-query CCDS DB by Protein ID:NP_001341416Link to BLAST:NP_001341416.1
Original member Current member NCBI NM_001354488.2 NP_001341417.1 Accepted alive Link to Nucleotide Sequence:NM_001354488.2Link to Protein Sequence:NP_001341417.1Re-query CCDS DB by Nucleotide ID:NM_001354488Re-query CCDS DB by Protein ID:NP_001341417Link to BLAST:NP_001341417.1
Original member Current member NCBI NM_001354489.2 NP_001341418.1 Accepted alive Link to Nucleotide Sequence:NM_001354489.2Link to Protein Sequence:NP_001341418.1Re-query CCDS DB by Nucleotide ID:NM_001354489Re-query CCDS DB by Protein ID:NP_001341418Link to BLAST:NP_001341418.1
Original member Current member NCBI NM_001354490.2 NP_001341419.1 Accepted alive Link to Nucleotide Sequence:NM_001354490.2Link to Protein Sequence:NP_001341419.1Re-query CCDS DB by Nucleotide ID:NM_001354490Re-query CCDS DB by Protein ID:NP_001341419Link to BLAST:NP_001341419.1
Original member Current member NCBI NM_001354491.2 NP_001341420.1 Accepted alive Link to Nucleotide Sequence:NM_001354491.2Link to Protein Sequence:NP_001341420.1Re-query CCDS DB by Nucleotide ID:NM_001354491Re-query CCDS DB by Protein ID:NP_001341420Link to BLAST:NP_001341420.1
Original member Current member NCBI NM_001354492.2 NP_001341421.1 Accepted alive Link to Nucleotide Sequence:NM_001354492.2Link to Protein Sequence:NP_001341421.1Re-query CCDS DB by Nucleotide ID:NM_001354492Re-query CCDS DB by Protein ID:NP_001341421Link to BLAST:NP_001341421.1
Original member Current member NCBI NM_001354494.2 NP_001341423.1 Accepted alive Link to Nucleotide Sequence:NM_001354494.2Link to Protein Sequence:NP_001341423.1Re-query CCDS DB by Nucleotide ID:NM_001354494Re-query CCDS DB by Protein ID:NP_001341423Link to BLAST:NP_001341423.1
Original member Current member NCBI NM_001354495.2 NP_001341424.1 Accepted alive Link to Nucleotide Sequence:NM_001354495.2Link to Protein Sequence:NP_001341424.1Re-query CCDS DB by Nucleotide ID:NM_001354495Re-query CCDS DB by Protein ID:NP_001341424Link to BLAST:NP_001341424.1
Original member Current member NCBI NM_001354496.2 NP_001341425.1 Accepted alive Link to Nucleotide Sequence:NM_001354496.2Link to Protein Sequence:NP_001341425.1Re-query CCDS DB by Nucleotide ID:NM_001354496Re-query CCDS DB by Protein ID:NP_001341425Link to BLAST:NP_001341425.1
Original member Current member NCBI NM_001354497.2 NP_001341426.1 Accepted alive Link to Nucleotide Sequence:NM_001354497.2Link to Protein Sequence:NP_001341426.1Re-query CCDS DB by Nucleotide ID:NM_001354497Re-query CCDS DB by Protein ID:NP_001341426Link to BLAST:NP_001341426.1
Original member Current member NCBI NM_001354498.2 NP_001341427.1 Accepted alive Link to Nucleotide Sequence:NM_001354498.2Link to Protein Sequence:NP_001341427.1Re-query CCDS DB by Nucleotide ID:NM_001354498Re-query CCDS DB by Protein ID:NP_001341427Link to BLAST:NP_001341427.1
Original member Current member NCBI NM_001354499.2 NP_001341428.1 Accepted alive Link to Nucleotide Sequence:NM_001354499.2Link to Protein Sequence:NP_001341428.1Re-query CCDS DB by Nucleotide ID:NM_001354499Re-query CCDS DB by Protein ID:NP_001341428Link to BLAST:NP_001341428.1
Original member Current member NCBI NM_018371.5 NP_060841.5 Accepted alive Link to Nucleotide Sequence:NM_018371.5Link to Protein Sequence:NP_060841.5Re-query CCDS DB by Nucleotide ID:NM_018371Re-query CCDS DB by Protein ID:NP_060841Link to BLAST:NP_060841.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123990.1 532 Q8TDX6-1 532 100% 0 0
NP_001341404.1 532 Q8TDX6-1 532 100% 0 0
NP_001341405.1 532 Q8TDX6-1 532 100% 0 0
NP_001341406.1 532 Q8TDX6-1 532 100% 0 0
NP_001341409.1 532 Q8TDX6-1 532 100% 0 0
NP_001341410.1 532 Q8TDX6-1 532 100% 0 0
NP_001341412.1 532 Q8TDX6-1 532 100% 0 0
NP_001341413.1 532 Q8TDX6-1 532 100% 0 0
NP_001341414.1 532 Q8TDX6-1 532 100% 0 0
NP_001341416.1 532 Q8TDX6-1 532 100% 0 0
NP_001341417.1 532 Q8TDX6-1 532 100% 0 0
NP_001341418.1 532 Q8TDX6-1 532 100% 0 0
NP_001341419.1 532 Q8TDX6-1 532 100% 0 0
NP_001341420.1 532 Q8TDX6-1 532 100% 0 0
NP_001341421.1 532 Q8TDX6-1 532 100% 0 0
NP_001341423.1 532 Q8TDX6-1 532 100% 0 0
NP_001341424.1 532 Q8TDX6-1 532 100% 0 0
NP_001341425.1 532 Q8TDX6-1 532 100% 0 0
NP_001341426.1 532 Q8TDX6-1 532 100% 0 0
NP_001341427.1 532 Q8TDX6-1 532 100% 0 0
NP_001341428.1 532 Q8TDX6-1 532 100% 0 0
NP_060841.5 532 Q8TDX6-1 532 100% 0 0

Chromosomal Locations for CCDS 6010.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19405780 19406069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19408613 19408694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19418656 19418750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19420340 19420518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19439830 19439931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19458426 19458642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19505201 19505834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGATGATGGTTCGCCGGGGGCTGCTTGCGTGGATTTCCCGGGTGGTGGTTTTGCTGGTGCTCCTCTGCT
GTGCTATCTCTGTCCTGTACATGTTGGCCTGCACCCCAAAAGGTGACGAGGAGCAGCTGGCACTGCCCAG
GGCCAACAGCCCCACGGGGAAGGAGGGGTACCAGGCCGTCCTTCAGGAGTGGGAGGAGCAGCACCGCAAC
TACGTGAGCAGCCTGAAGCGGCAGATCGCACAGCTCAAGGAGGAGCTGCAGGAGAGGAGTGAGCAGCTCA
GGAATGGGCAGTACCAAGCCAGCGATGCTGCTGGCCTGGGTCTGGACAGGAGCCCCCCAGAGAAAACCCA
GGCCGACCTCCTGGCCTTCCTGCACTCGCAGGTGGACAAGGCAGAGGTGAATGCTGGCGTCAAGCTGGCC
ACAGAGTATGCAGCAGTGCCTTTCGATAGCTTTACTCTACAGAAGGTGTACCAGCTGGAGACTGGCCTTA
CCCGCCACCCCGAGGAGAAGCCTGTGAGGAAGGACAAGCGGGATGAGTTGGTGGAAGCCATTGAATCAGC
CTTGGAGACCCTGAACAGTCCTGCAGAGAACAGCCCCAATCACCGTCCTTACACGGCCTCTGATTTCATA
GAAGGGATCTACCGAACAGAAAGGGACAAAGGGACATTGTATGAGCTCACCTTCAAAGGGGACCACAAAC
ACGAATTCAAACGGCTCATCTTATTTCGACCATTCGGCCCCATCATGAAAGTGAAAAATGAAAAGCTCAA
CATGGCCAACACGCTTATCAATGTTATCGTGCCTCTAGCAAAAAGGGTGGACAAGTTCCGGCAGTTCATG
CAGAATTTCAGGGAGATGTGCATTGAGCAGGATGGGAGAGTCCATCTCACTGTTGTTTACTTTGGGAAAG
AAGAAATAAATGAAGTCAAAGGAATACTTGAAAACACTTCCAAAGCTGCCAACTTCAGGAACTTTACCTT
CATCCAGCTGAATGGAGAATTTTCTCGGGGAAAGGGACTTGATGTTGGAGCCCGCTTCTGGAAGGGAAGC
AACGTCCTTCTCTTTTTCTGTGATGTGGACATCTACTTCACATCTGAATTCCTCAATACGTGTAGGCTGA
ATACACAGCCAGGGAAGAAGGTATTTTATCCAGTTCTTTTCAGTCAGTACAATCCTGGCATAATATACGG
CCACCATGATGCAGTCCCTCCCTTGGAACAGCAGCTGGTCATAAAGAAGGAAACTGGATTTTGGAGAGAC
TTTGGATTTGGGATGACGTGTCAGTATCGGTCAGACTTCATCAATATAGGTGGGTTTGATCTGGACATCA
AAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCTCATAGTGGTACGGAC
GCCTGTGCGAGGACTCTTCCACCTCTGGCATGAGAAGCGCTGCATGGACGAGCTGACCCCCGAGCAGTAC
AAGATGTGCATGCAGTCCAAGGCCATGAACGAGGCATCCCACGGCCAGCTGGGCATGCTGGTGTTCAGGC
ACGAGATAGAGGCTCACCTTCGCAAACAGAAACAGAAGACAAGTAGCAAAAAAACATGA

Translation (532 aa):
MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAVLQEWEEQHRN
YVSSLKRQIAQLKEELQERSEQLRNGQYQASDAAGLGLDRSPPEKTQADLLAFLHSQVDKAEVNAGVKLA
TEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSPNHRPYTASDFI
EGIYRTERDKGTLYELTFKGDHKHEFKRLILFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFM
QNFREMCIEQDGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGS
NVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRD
FGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQY
KMCMQSKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH