NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3172.1 Public Homo sapiens 3 MME 24 110 108 CCDS HistoryNCBI Gene:4311Re-query CCDS DB by CCDS ID:3172.1Re-query CCDS DB by GeneID:4311See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360490.7 ENSP00000353679.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360490.7Link to Ensembl Protein Viewer:ENSP00000353679.2Re-query CCDS DB by Nucleotide ID:ENST00000360490Re-query CCDS DB by Protein ID:ENSP00000353679
Original member Current member EBI ENST00000493237.5 ENSP00000417079.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493237.5Link to Ensembl Protein Viewer:ENSP00000417079.1Re-query CCDS DB by Nucleotide ID:ENST00000493237Re-query CCDS DB by Protein ID:ENSP00000417079
Original member Current member EBI ENST00000460393.6 ENSP00000418525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000460393.6Link to Ensembl Protein Viewer:ENSP00000418525.1Re-query CCDS DB by Nucleotide ID:ENST00000460393Re-query CCDS DB by Protein ID:ENSP00000418525
Original member Current member EBI ENST00000491026.6 ENSP00000418791.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491026.6Link to Ensembl Protein Viewer:ENSP00000418791.2Re-query CCDS DB by Nucleotide ID:ENST00000491026Re-query CCDS DB by Protein ID:ENSP00000418791
Original member Current member EBI ENST00000462745.5 ENSP00000419653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462745.5Link to Ensembl Protein Viewer:ENSP00000419653.1Re-query CCDS DB by Nucleotide ID:ENST00000462745Re-query CCDS DB by Protein ID:ENSP00000419653
Original member Current member EBI ENST00000492661.5 ENSP00000420389.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492661.5Link to Ensembl Protein Viewer:ENSP00000420389.1Re-query CCDS DB by Nucleotide ID:ENST00000492661Re-query CCDS DB by Protein ID:ENSP00000420389
Original member Current member EBI ENST00000473730.6 ENSP00000420542.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473730.6Link to Ensembl Protein Viewer:ENSP00000420542.2Re-query CCDS DB by Nucleotide ID:ENST00000473730Re-query CCDS DB by Protein ID:ENSP00000420542
Original member Current member EBI ENST00000675418.2 ENSP00000502021.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675418.2Link to Ensembl Protein Viewer:ENSP00000502021.2Re-query CCDS DB by Nucleotide ID:ENST00000675418Re-query CCDS DB by Protein ID:ENSP00000502021
Original member Current member EBI ENST00000680057.1 ENSP00000505211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680057.1Link to Ensembl Protein Viewer:ENSP00000505211.1Re-query CCDS DB by Nucleotide ID:ENST00000680057Re-query CCDS DB by Protein ID:ENSP00000505211
Original member Current member EBI ENST00000680282.1 ENSP00000505690.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680282.1Link to Ensembl Protein Viewer:ENSP00000505690.1Re-query CCDS DB by Nucleotide ID:ENST00000680282Re-query CCDS DB by Protein ID:ENSP00000505690
Original member Current member NCBI NM_000902.5 NP_000893.2 Accepted alive Link to Nucleotide Sequence:NM_000902.5Link to Protein Sequence:NP_000893.2Re-query CCDS DB by Nucleotide ID:NM_000902Re-query CCDS DB by Protein ID:NP_000893Link to BLAST:NP_000893.2
Original member Current member NCBI NM_001354642.2 NP_001341571.1 Accepted alive Link to Nucleotide Sequence:NM_001354642.2Link to Protein Sequence:NP_001341571.1Re-query CCDS DB by Nucleotide ID:NM_001354642Re-query CCDS DB by Protein ID:NP_001341571Link to BLAST:NP_001341571.1
Original member Current member NCBI NM_001354643.1 NP_001341572.1 Accepted alive Link to Nucleotide Sequence:NM_001354643.1Link to Protein Sequence:NP_001341572.1Re-query CCDS DB by Nucleotide ID:NM_001354643Re-query CCDS DB by Protein ID:NP_001341572Link to BLAST:NP_001341572.1
Original member Current member NCBI NM_007287.4 NP_009218.2 Accepted alive Link to Nucleotide Sequence:NM_007287.4Link to Protein Sequence:NP_009218.2Re-query CCDS DB by Nucleotide ID:NM_007287Re-query CCDS DB by Protein ID:NP_009218Link to BLAST:NP_009218.2
Original member Current member NCBI NM_007288.3 NP_009219.2 Accepted alive Link to Nucleotide Sequence:NM_007288.3Link to Protein Sequence:NP_009219.2Re-query CCDS DB by Nucleotide ID:NM_007288Re-query CCDS DB by Protein ID:NP_009219Link to BLAST:NP_009219.2
Original member Current member NCBI NM_007289.4 NP_009220.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007289.4Link to Protein Sequence:NP_009220.2Re-query CCDS DB by Nucleotide ID:NM_007289Re-query CCDS DB by Protein ID:NP_009220Link to BLAST:NP_009220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000893.2 750 P08473 750 100% 0 0
NP_001341571.1 750 P08473 750 100% 0 0
NP_001341572.1 750 P08473 750 100% 0 0
NP_009218.2 750 P08473 750 100% 0 0
NP_009219.2 750 P08473 750 100% 0 0
NP_009220.2 750 P08473 750 100% 0 0

Chromosomal Locations for CCDS 3172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155084168 155084327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155085059 155085094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155114994 155115155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155116479 155116559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155116664 155116759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155116868 155116986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155118746 155118811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155138102 155138236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155140191 155140292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155141991 155142127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155142237 155142330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155143443 155143571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155144359 155144457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155147144 155147224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155148550 155148653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155160390 155160448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155166902 155167021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155168492 155168625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155168732 155168797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155172117 155172212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155172536 155172612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155180360 155180459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGGGCAAGTCAGAAAGTCAGATGGATATAACTGATATCAACACTCCAAAGCCAAAGAAGAAACAGCGAT
GGACTCCACTGGAGATCAGCCTCTCGGTCCTTGTCCTGCTCCTCACCATCATAGCTGTGACAATGATCGC
ACTCTATGCAACCTACGATGATGGTATTTGCAAGTCATCAGACTGCATAAAATCAGCTGCTCGACTGATC
CAAAACATGGATGCCACCACTGAGCCTTGTACAGACTTTTTCAAATATGCTTGCGGAGGCTGGTTGAAAC
GTAATGTCATTCCCGAGACCAGCTCCCGTTACGGCAACTTTGACATTTTAAGAGATGAACTAGAAGTCGT
TTTGAAAGATGTCCTTCAAGAACCCAAAACTGAAGATATAGTAGCAGTGCAGAAAGCAAAAGCATTGTAC
AGGTCTTGTATAAATGAATCTGCTATTGATAGCAGAGGTGGAGAACCTCTACTCAAACTGTTACCAGACA
TATATGGGTGGCCAGTAGCAACAGAAAACTGGGAGCAAAAATATGGTGCTTCTTGGACAGCTGAAAAAGC
TATTGCACAACTGAATTCTAAATATGGGAAAAAAGTCCTTATTAATTTGTTTGTTGGCACTGATGATAAG
AATTCTGTGAATCATGTAATTCATATTGACCAACCTCGACTTGGCCTCCCTTCTAGAGATTACTATGAAT
GCACTGGAATCTATAAAGAGGCTTGTACAGCATATGTGGATTTTATGATTTCTGTGGCCAGATTGATTCG
TCAGGAAGAAAGATTGCCCATCGATGAAAACCAGCTTGCTTTGGAAATGAATAAAGTTATGGAATTGGAA
AAAGAAATTGCCAATGCTACGGCTAAACCTGAAGATCGAAATGATCCAATGCTTCTGTATAACAAGATGA
CATTGGCCCAGATCCAAAATAACTTTTCACTAGAGATCAATGGGAAGCCATTCAGCTGGTTGAATTTCAC
AAATGAAATCATGTCAACTGTGAATATTAGTATTACAAATGAGGAAGATGTGGTTGTTTATGCTCCAGAA
TATTTAACCAAACTTAAGCCCATTCTTACCAAATATTCTGCCAGAGATCTTCAAAATTTAATGTCCTGGA
GATTCATAATGGATCTTGTAAGCAGCCTCAGCCGAACCTACAAGGAGTCCAGAAATGCTTTCCGCAAGGC
CCTTTATGGTACAACCTCAGAAACAGCAACTTGGAGACGTTGTGCAAACTATGTCAATGGGAATATGGAA
AATGCTGTGGGGAGGCTTTATGTGGAAGCAGCATTTGCTGGAGAGAGTAAACATGTGGTCGAGGATTTGA
TTGCACAGATCCGAGAAGTTTTTATTCAGACTTTAGATGACCTCACTTGGATGGATGCCGAGACAAAAAA
GAGAGCTGAAGAAAAGGCCTTAGCAATTAAAGAAAGGATCGGCTATCCTGATGACATTGTTTCAAATGAT
AACAAACTGAATAATGAGTACCTCGAGTTGAACTACAAAGAAGATGAATACTTCGAGAACATAATTCAAA
ATTTGAAATTCAGCCAAAGTAAACAACTGAAGAAGCTCCGAGAAAAGGTGGACAAAGATGAGTGGATAAG
TGGAGCAGCTGTAGTCAATGCATTTTACTCTTCAGGAAGAAATCAGATAGTCTTCCCAGCCGGCATTCTG
CAGCCCCCCTTCTTTAGTGCCCAGCAGTCCAACTCATTGAACTATGGGGGCATCGGCATGGTCATAGGAC
ACGAAATCACCCATGGCTTCGATGACAATGGCAGAAACTTTAACAAAGATGGAGACCTCGTTGACTGGTG
GACTCAACAGTCTGCAAGTAACTTTAAGGAGCAATCCCAGTGCATGGTGTATCAGTATGGAAACTTTTCC
TGGGACCTGGCAGGTGGACAGCACCTTAATGGAATTAATACACTGGGAGAAAACATTGCTGATAATGGAG
GTCTTGGTCAAGCATACAGAGCCTATCAGAATTATATTAAAAAGAATGGCGAAGAAAAATTACTTCCTGG
ACTTGACCTAAATCACAAACAACTATTTTTCTTGAACTTTGCACAGGTGTGGTGTGGAACCTATAGGCCA
GAGTATGCGGTTAACTCCATTAAAACAGATGTGCACAGTCCAGGCAATTTCAGGATTATTGGGACTTTGC
AGAACTCTGCAGAGTTTTCAGAAGCCTTTCACTGCCGCAAGAATTCATACATGAATCCAGAAAAGAAGTG
CCGGGTTTGGTGA

Translation (750 aa):
MGKSESQMDITDINTPKPKKKQRWTPLEISLSVLVLLLTIIAVTMIALYATYDDGICKSSDCIKSAARLI
QNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALY
RSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDK
NSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELE
KEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPE
YLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNME
NAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSND
NKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGIL
QPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFS
WDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRP
EYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH