NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39516.1 Public Mus musculus 6 Capg 23 108 98 CCDS HistoryNCBI Gene:12332Re-query CCDS DB by CCDS ID:39516.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071044.12 ENSMUSP00000063389.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071044.12Link to Ensembl Protein Viewer:ENSMUSP00000063389.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071044Re-query CCDS DB by Protein ID:ENSMUSP00000063389
Original member Current member EBI ENSMUST00000114071.7 ENSMUSP00000109705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114071.7Link to Ensembl Protein Viewer:ENSMUSP00000109705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114071Re-query CCDS DB by Protein ID:ENSMUSP00000109705
Original member Current member EBI ENSMUST00000114072.7 ENSMUSP00000109706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114072.7Link to Ensembl Protein Viewer:ENSMUSP00000109706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114072Re-query CCDS DB by Protein ID:ENSMUSP00000109706
Original member Current member NCBI NM_001042534.3 NP_001035999.1 Accepted alive Link to Nucleotide Sequence:NM_001042534.3Link to Protein Sequence:NP_001035999.1Re-query CCDS DB by Nucleotide ID:NM_001042534Re-query CCDS DB by Protein ID:NP_001035999Link to BLAST:NP_001035999.1
Original member Current member NCBI NM_001271395.1 NP_001258324.1 Accepted alive Link to Nucleotide Sequence:NM_001271395.1Link to Protein Sequence:NP_001258324.1Re-query CCDS DB by Nucleotide ID:NM_001271395Re-query CCDS DB by Protein ID:NP_001258324Link to BLAST:NP_001258324.1
Original member Current member NCBI NM_001271415.1 NP_001258344.1 Accepted alive Link to Nucleotide Sequence:NM_001271415.1Link to Protein Sequence:NP_001258344.1Re-query CCDS DB by Nucleotide ID:NM_001271415Re-query CCDS DB by Protein ID:NP_001258344Link to BLAST:NP_001258344.1
Original member Current member NCBI NM_007599.4 NP_031625.2 Accepted alive Link to Nucleotide Sequence:NM_007599.4Link to Protein Sequence:NP_031625.2Re-query CCDS DB by Nucleotide ID:NM_007599Re-query CCDS DB by Protein ID:NP_031625Link to BLAST:NP_031625.2

Chromosomal Locations for CCDS 39516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72555286 72555308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72555477 72555649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72555751 72555905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72556085 72556252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72557711 72557860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72558165 72558257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72558739 72558871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72561028 72561116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72562810 72562875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGTACACACCCATCCCTCAGAGTGGCTCTCCATTCCCGGCCTCAGTCCAAGACCCAGGCCTACACATAT
GGCGTGTGGAGAAGCTGAAGCCGGTGCCCATAGCACGAGAGAGCCATGGCATCTTTTTCTCTGGGGACTC
CTACCTAGTGCTTCACAATGGCCCAGAGGAGGCTTCCCATCTGCACCTGTGGATAGGCCAGCAGTCCTCC
CGGGATGAGCAGGGGGCCTGTGCAGTGCTGGCTGTGCATCTCAACACCCTGCTGGGGGAGCGGCCAGTGC
AGCACCGTGAGGTTCAAGGCAATGAGTCTGACCTCTTCATGAGCTACTTCCCACGAGGCCTCAAGTACCG
GGAAGGTGGTGTAGAGTCGGCATTTCACAAGACAACCTCGGGCGCCACCCCAGCAGCCATCAGGAAGCTC
TACCAGGTTAAGGGGAAGAAGAACATCCGTGCGACCGAGAGGGCTCTGAGTTGGGACAGCTTCAACACTG
GGGACTGCTTCATCCTGGACCTGGGTCAGAACATCTTTGCCTGGTGTGGTGGAAAGTCCAACATCCTTGA
GCGCAACAAGGCGAGGGACCTGGCCCTGGCCATCAGGGACAGCGAGCGGCAGGGCAAGGCCCAGGTGGAA
ATCATCACTGATGGAGAGGAGCCAGCCGAGATGATTCAGGTTCTGGGCCCCAAGCCTGCTCTGAAGGAGG
GTAACCCCGAGGAAGACATTACAGCTGACCAGACCAACGCCCAGGCTGCAGCCCTGTATAAGGTCTCTGA
TGCCACTGGACAGATGAATCTGACCAAGGTGGCTGACTCCAGCCCTTTTGCCTCTGAACTGCTAATTCCA
GATGACTGCTTTGTTCTGGACAACGGGCTGTGTGGCAAAATCTACATCTGGAAGGGGAGAAAAGCTAATG
AGAAAGAGCGGCAGGCAGCCCTCCAAGTGGCTGATGGCTTCATCTCTCGAATGAGGTATTCCCCAAACAC
TCAGGTGGAGATACTGCCCCAGGGCCGAGAGAGTCCCATCTTCAAGCAATTCTTCAAGAACTGGAAGTGA

Translation (349 aa):
MYTPIPQSGSPFPASVQDPGLHIWRVEKLKPVPIARESHGIFFSGDSYLVLHNGPEEASHLHLWIGQQSS
RDEQGACAVLAVHLNTLLGERPVQHREVQGNESDLFMSYFPRGLKYREGGVESAFHKTTSGATPAAIRKL
YQVKGKKNIRATERALSWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVE
IITDGEEPAEMIQVLGPKPALKEGNPEEDITADQTNAQAAALYKVSDATGQMNLTKVADSSPFASELLIP
DDCFVLDNGLCGKIYIWKGRKANEKERQAALQVADGFISRMRYSPNTQVEILPQGRESPIFKQFFKNWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH