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Report for CCDS10985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10985.1 Public Homo sapiens 16 SPATA2L 24 110 108 CCDS HistoryNCBI Gene:124044Re-query CCDS DB by CCDS ID:10985.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289805.10 ENSP00000289805.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289805.10Link to Ensembl Protein Viewer:ENSP00000289805.5Re-query CCDS DB by Nucleotide ID:ENST00000289805Re-query CCDS DB by Protein ID:ENSP00000289805
Original member Current member NCBI NM_152339.4 NP_689552.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152339.4Link to Protein Sequence:NP_689552.2Re-query CCDS DB by Nucleotide ID:NM_152339Re-query CCDS DB by Protein ID:NP_689552Link to BLAST:NP_689552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689552.2 424 Q8IUW3-1 424 100% 0 0

Chromosomal Locations for CCDS 10985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89697334 89698305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89700930 89701232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGGCAGCAGCTCGCTGTCCGAGGACTACCGCCAGTGCCTGGAGCGCGAGCTGCGACGGGGCCGCGCGG
GCGTGTGCGGGGACCCCTCGCTGCGCGCGGTGCTCTGGCAGATCCTGGTGGAGGACTTCGACCTGCACGG
GGCGCTGCAGGACGACGCGCTGGCTCTGCTCACCGACGGGCTGTGGGGCCGCGCCGACCTGGCGCCCGCG
CTACGCGGCCTGGCTCGCGCCTTCGAGCTTCTGGAGCTCGCCGCGGTGCACCTGTACCTGCTGCCCTGGA
GGAAGGAGTTCACCACCATCAAGACCTTCTCTGGGGGCTACGTGCACGTGCTGAAGGGTGTGCTCTCAGA
CGACCTCCTCCTGAAGAGCTTCCAGAAGATGGGCTACGTACGCAGAGACAGCCATCGGCTCATGGTGACC
GCCCTGCCCCCCGCCTGCCAGCTGGTGCAGGTGGCCCTGGGCTGCTTCGCCCTCCGGCTGGAGTGTGAGA
TCCTGGGTGAGGTGCTGGCCCAGCTGGGCACCAGTGTGCTGCCAGCTGAGGAGCTGCTGCAGGCACGGCG
TGCCAGCGGGGACGTGGCCTCCTGTGTGGCCTGGCTGCAGCAGCGGCTGGCCCAGGATGAGGAGCCGCCA
CCCCTGCCCCCCCGAGGCTCCCCTGCTGCTTACAGGGCCCCACTGGACTTATACCGGGACTTGCAGGAAG
ACGAGGGGTCGGAGGACGCCAGCCTGTATGGGGAGCCGTCACCAGGCCCTGACTCGCCCCCGGCGGAGCT
GGCCTACAGGCCACCACTCTGGGAGCAGAGTGCCAAACTGTGGGGCACTGGGGGCCGGGCCTGGGAGCCC
CCAGCTGAGGAGCTGCCGCAGGCCAGCAGCCCACCATATGGGGCCTTGGAGGAGGGGCTGGAACCTGAAC
CTTCCGCCTTCTCCTTCCTCTCTCTGCGCCGTGAGCTGAGTAGGCCTGGGGACCTGGCCACCCCTGAAAG
CTCTGCAGCGGCCAGCCCGAGGCGTATTCGGGCAGAGGGGGTACCAGCCTCAGCCTATAGGTCTGTCTCG
GAGCCCCCAGGCTACCAGGCACACAGCTGCCTGTCCCCTGGCGCCCTGCCCACCCTCTGCTGCGACACCT
GTCGCCAGCTGCATGCTGCCCACTGTGCAGCCCTGCCCGCCTGCCGTCCAGGCCACTCGCTGCGTGTGCT
GCTTGGCGACGCCCAGCGGCGCTTGTGGCTACAGCGTGCACAGATGGACACTCTGCTCTACAACAGCCCC
GGGGCCCGGCCCTAG

Translation (424 aa):
MGSSSLSEDYRQCLERELRRGRAGVCGDPSLRAVLWQILVEDFDLHGALQDDALALLTDGLWGRADLAPA
LRGLARAFELLELAAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSDDLLLKSFQKMGYVRRDSHRLMVT
ALPPACQLVQVALGCFALRLECEILGEVLAQLGTSVLPAEELLQARRASGDVASCVAWLQQRLAQDEEPP
PLPPRGSPAAYRAPLDLYRDLQEDEGSEDASLYGEPSPGPDSPPAELAYRPPLWEQSAKLWGTGGRAWEP
PAEELPQASSPPYGALEEGLEPEPSAFSFLSLRRELSRPGDLATPESSAAASPRRIRAEGVPASAYRSVS
EPPGYQAHSCLSPGALPTLCCDTCRQLHAAHCAALPACRPGHSLRVLLGDAQRRLWLQRAQMDTLLYNSP
GARP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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