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Report for CCDS26728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26728.1 Public Mus musculus 13 Naip6 23 108 98 CCDS HistoryNCBI Gene:17952Re-query CCDS DB by CCDS ID:26728.1Re-query CCDS DB by GeneID:17952See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042220.2 ENSMUSP00000041766.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042220.2Link to Ensembl Protein Viewer:ENSMUSP00000041766.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000042220Re-query CCDS DB by Protein ID:ENSMUSP00000041766
Original member Current member EBI ENSMUST00000118574.7 ENSMUSP00000112867.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118574.7Link to Ensembl Protein Viewer:ENSMUSP00000112867.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118574Re-query CCDS DB by Protein ID:ENSMUSP00000112867
Original member Current member NCBI NM_010871.2 NP_035001.2 Accepted alive Link to Nucleotide Sequence:NM_010871.2Link to Protein Sequence:NP_035001.2Re-query CCDS DB by Nucleotide ID:NM_010871Re-query CCDS DB by Protein ID:NP_035001Link to BLAST:NP_035001.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035001.2 1403 Q9JIB6 1403 100% 0 0

Chromosomal Locations for CCDS 26728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100283549 100283913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100285677 100285841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100288101 100288187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100294733 100294885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100296886 100297053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100298740 100300851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100301335 100301392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100302184 100302265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100303236 100303335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100304349 100304468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100307027 100307078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100308199 100308280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100315435 100315534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100315984 100316551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4212 nt):
ATGGCTGAGCATGGGGAGTCCTCCGAGGATCGGATTTCTGAGATTGATTATGAATTTCTCGCTGAGCTCT
CTGCTCGTTTCGGGATGAATCTAGTTCAGCTGGCAAAGAGCCAAGAAGAAGAAGACCATAAAGAACGGAT
GAAAATGAAGAAAGGTTTTAACTCACAGATGCGCAGTGAAGCCAAACGACTAAAGACCTTTGAGTCCTAT
GACACGTTCAGATCATGGACGCCACAGGAGATGGCAGCTGCTGGGTTTTACCACACAGGGGTGAAACTTG
GGGTTCAGTGCTTTTGCTGTAGCTTGATCCTCTTTGGTAACAGCCTCAGGAAGCTTCCCATAGAGAGACA
CAAGAAATTACGACCAGAATGTGAGTTCCTTCAGGGAAAAGATGTTGGTAACATTGGCAAGTATGACATC
CGGGTGAAGAGTCCAGAGAAGATGCTGAGAGGTGGCAAAGCAAGGTACCATGAAGAGGAGGCCAGACTGG
AGTCCTTTGAGGACTGGCCATTTTATGCCCATGGGACATCACCACGTGCACTGTCAGCAGCTGGCTTTGT
CTTTACAGGTAAAAGGGACACTGTGCAGTGTTTCTCCTGTGGCGGAAGCTTGGGCAACTGGGAAGAAGGA
GATGACCCCTGGAAGGAGCATGCCAAGTGGTTCCCCAAATGTGAATTTCTTCAAAGTAAGAAATCCTCAG
AGGAAATTGCCCAGTATATTCAAGACTACGAGGGATTTGTTCATGTAACGGGAGAACATTTTGTGAAGTC
CTGGGTCAGAAGAGAATTACCTATGGTATCAGCTTACTGCAATGACAGTGTCTTCACTAATGAAGAACTA
AGGATGGACATGTTTAAGGACTGGCCCCAAGAATCACCTGTGGGTTTTGAAGCTCTAGTCAGAGCAGGCT
TTTTCTACACTGGCAAAAAGGACATTGTCCGGTGTTTTTCCTGTGGAGGATGTTTGGAGAAGTGGGCAGA
AGGTGACGACCCAATGGAAGATCACATCAAGTTTTTTCCCGAATGTGTATTTCTTCAAACCTTGAAGTCC
TCTGCAGAAGTAATTCCAACCCTTCAGAGCCAATATGCACTTCCAGAAGCCACGGAAACCACACGTGAAA
GCAACCATGATGATGCAGCAGCAGTTCATTCTACAGTGGTGGACTTGGGTAGGAGTGAAGCTCAGTGGTT
TCAAGAGGCCAGGAGTCTGAGTGAGCAGCTGAGAGACACCTACACTAAAACCAGTTTCTGCCACATGAAC
TTGCCAGAAGTGTGCTCCAGCCTCGGCACTGACCACTTGCTCGGCTGTGATGTGTCCATCATTTCAAAGC
ACGTCAGCCAGCCTGTGCAAGGGGCCCTGACGATCCCAGAGGTCTTCTCCAATCTCAGCTCTGTCATGTG
TGTGGAGGGGGAAGCTGGAAGTGGAAAGACAACCTTCCTGAAGAGGATAGCTTTTCTCTGGGCATCAGGA
TGCTGCCCCCTGTTGTACAGGTTCCAGCTGGTCTTCTACCTCTCCCTTAGTTCCATCACACCAGATCAGG
GACTGGCCAACATCATCTGTACCCAACTCCTAGGGGCAGGAGGCTGCATTAGTGAAGTGTGTCTGAGCAG
CAGCATCCAGCAGTTACAACACCAGGTGCTGTTCCTGTTGGATGACTACAGTGGGCTGGCCTCACTCCCC
CAAGCCCTACACACACTGATTACAAAAAACTACTTGTTCCGGACCTGCTTATTGATCGCTGTTCATACAA
ACAGGGTCAGAGACATCCGCCCATACCTAGGTACAAGTCTAGAGATCCAAGAGTTTCCCTTCTATAATAC
TGTCTTTGTGTTACGGAAGTTTTTTTCACATGACATAATCTGTGTGGAAAAGCTTATAATTTACTTTAGT
GAAAATAAAGACTTACAGGGAGTTTACAAGACCCCTCTCTTCGTAGCAGCAGTATGTAATGACTGGAATC
AAAATGCATCTGCCCAGGATGACTTTCAAGATGTGACACTTTTCCATTCCTACATGCAATACCTGTCCTT
AAAATACAAAGCTACAGCTGAGTCTCTCCAGGCCACTGTGTCCTCATGTGGGCAGCTGGCCTTGACAGGG
CTTTTCTCATCGTGCTTTGAGTTCAATAGTGATGACCTGGCAGAGGCAGGAGTTGATGAAGATGTAAAGC
TTACCACCTTCTTGATGAGCAAATTCACCGCCCAGAGACTGAGGCCAGTCTACCGATTTTTAGGTCCTCT
GTTCCAGGAGTTTCTTGCTGCCGTGAGGTTGACTGAACTCCTGAGTTCAGATAGGCAGGAAGACCAAGAT
CTTGGACTTTATTATTTGAGACAAATTGACTCACCTCTGAAGGCAATAAACTCCTTTAACATATTTTTGT
ATTATGTCTCCAGCCACTCTTCCTCAAAGGCAGCGCCAACAGTTGTATCTCATTTGCTTCAGTTGGTGGA
TGAGAAAGAGTCACTGGAGAACATGTCTGAAAATGAGGATTACATGAAGCTCCATCCACAAACTTTTCTA
TGGTTTCAGTTTGTTAGAGGGTTGTGGCTGGTGTCTCCTGAATCTTTCTCTTCATTCGTTTCAGAACATT
TATTGCGCCTTGCTCTAATCTTTGCTTATGAAAGCAACACAGTTGCTGAATGCTCTCCATTTATTTTGCA
ATTCCTTCGAGGAAGAACACTGGCTTTAAGAGTACTGAATTTAGAGTACTTTTGGGACCACCCAGAAAGC
CTGTTACTGTTGAGGAGTTTAAAGGTTTCCATAAATGGAAATAAAATGTCATCTTATGTAGATTATTCAT
TTAAGACATATTTTGAAAACTTACAGCCACCAGCTATAAATGAGGAGTATACATCTGCCTTTGAGCATGT
AAGTGAATGGAGGAGAAATTTTGCTCAAGATGAGGAGATCATAAAAAACTATGAAAATATCTGGCCCAGA
GCCCTACCAGACATCAGTGAAGGGTACTGGAATCTGTCCCCCAAGCCATGCAAGATCCCCAAGCTGGAAG
TTCAAGTGAACAACATGGGTCCAGCAGACCAAGCACTGCTCCAGGTCCTCATGGAAGTCTTCTCAGCTTC
ACAGAGTATTGAGTTCCATTTATTCAACAGCAGTGGCTTCCTTGAAAGCATCCGCCCAGCTCTGGAGCTG
AGTAAGGCCTCTGTCACCAAGTGTTCCATGTCCAGGCTGGAGCTCAGCAGAGCAGAACAGGAGTTGCTTC
TCACCCTGCCTGCCCTGCAGTCTCTCGAGGTCTCAGAGACAAACCAGTTACCAGATCAGCTCTTCCATAA
CTTGCACAAGTTCCTGGGCCTGAAAGAACTGTGTGTGAGACTAGATGGCAAACCGGATGTGCTCTCAGTC
CTTCCTGAAGAGTTCCTGAACCTCCATCACATGGAGAAGTTATCCATCAGAACCTCTACAGAGTCTGACC
TCTCCAAACTAGTTAAATTCATCCAGAACTTTCCAAATCTCCATGTTTTCCATCTGAAATGTGATTTCCT
TTCAAATTGTGAGTCTCTCATGACTGCGCTTGCTTCCTGCAAGAAACTCAGAGAGATTGAGTTTTCTGGA
CAATGCTTTGAAGCCATGACCTTTGTCAACATTTTGCCAAATTTTGTTTCTCTGAAGATACTGAGTCTTA
AAGGTCAACAATTTGCAGATAAGGAAACATCAGAAAAGTTTGCCCAGGCTCTGGGTTCTCTCAGGAACTT
AGAGGAACTGCTTGTTCCCACTGGGGATGGGATTCACCAAGTGGCCAAACTGATTGTCCGGCAGTGTCTG
CAGCTTCCGTGCCTCCGAGTTCTCGCCTTTCACGACATCTTGGACGATGAAAGTGTGATTGAAATTGCCA
GGGCGGCAACCAGTGGAAGTTTCCAGAAACTTGAAAACTTAGATATTTCAATGAATCACAAGATTACCGA
GGAAGGATACAGAAATTTCTTTCAAGCCCTGGACAACTTGCCAAACCTACAAATGCTGAACATCTGCAGG
AATATCCCAGGACGCATTCAAGTTCAGGCCACCACTGTCAAGGCTTTGGGTCACTGTGTGTCCCGACTGC
CCAGCCTCACCAGGCTGGGGATGCTCAGTTGGCTCCTGGATGAAGAGGACATGAAAGTGATTAATGATGT
GAAGGAAAGACACCCCCAGTCCAAACGCTTGACTATCTTCTGGAAATGGATAGTCCCGTTCTCTCCTGTT
GTCCTGGAGTAA

Translation (1403 aa):
MAEHGESSEDRISEIDYEFLAELSARFGMNLVQLAKSQEEEDHKERMKMKKGFNSQMRSEAKRLKTFESY
DTFRSWTPQEMAAAGFYHTGVKLGVQCFCCSLILFGNSLRKLPIERHKKLRPECEFLQGKDVGNIGKYDI
RVKSPEKMLRGGKARYHEEEARLESFEDWPFYAHGTSPRALSAAGFVFTGKRDTVQCFSCGGSLGNWEEG
DDPWKEHAKWFPKCEFLQSKKSSEEIAQYIQDYEGFVHVTGEHFVKSWVRRELPMVSAYCNDSVFTNEEL
RMDMFKDWPQESPVGFEALVRAGFFYTGKKDIVRCFSCGGCLEKWAEGDDPMEDHIKFFPECVFLQTLKS
SAEVIPTLQSQYALPEATETTRESNHDDAAAVHSTVVDLGRSEAQWFQEARSLSEQLRDTYTKTSFCHMN
LPEVCSSLGTDHLLGCDVSIISKHVSQPVQGALTIPEVFSNLSSVMCVEGEAGSGKTTFLKRIAFLWASG
CCPLLYRFQLVFYLSLSSITPDQGLANIICTQLLGAGGCISEVCLSSSIQQLQHQVLFLLDDYSGLASLP
QALHTLITKNYLFRTCLLIAVHTNRVRDIRPYLGTSLEIQEFPFYNTVFVLRKFFSHDIICVEKLIIYFS
ENKDLQGVYKTPLFVAAVCNDWNQNASAQDDFQDVTLFHSYMQYLSLKYKATAESLQATVSSCGQLALTG
LFSSCFEFNSDDLAEAGVDEDVKLTTFLMSKFTAQRLRPVYRFLGPLFQEFLAAVRLTELLSSDRQEDQD
LGLYYLRQIDSPLKAINSFNIFLYYVSSHSSSKAAPTVVSHLLQLVDEKESLENMSENEDYMKLHPQTFL
WFQFVRGLWLVSPESFSSFVSEHLLRLALIFAYESNTVAECSPFILQFLRGRTLALRVLNLEYFWDHPES
LLLLRSLKVSINGNKMSSYVDYSFKTYFENLQPPAINEEYTSAFEHVSEWRRNFAQDEEIIKNYENIWPR
ALPDISEGYWNLSPKPCKIPKLEVQVNNMGPADQALLQVLMEVFSASQSIEFHLFNSSGFLESIRPALEL
SKASVTKCSMSRLELSRAEQELLLTLPALQSLEVSETNQLPDQLFHNLHKFLGLKELCVRLDGKPDVLSV
LPEEFLNLHHMEKLSIRTSTESDLSKLVKFIQNFPNLHVFHLKCDFLSNCESLMTALASCKKLREIEFSG
QCFEAMTFVNILPNFVSLKILSLKGQQFADKETSEKFAQALGSLRNLEELLVPTGDGIHQVAKLIVRQCL
QLPCLRVLAFHDILDDESVIEIARAATSGSFQKLENLDISMNHKITEEGYRNFFQALDNLPNLQMLNICR
NIPGRIQVQATTVKALGHCVSRLPSLTRLGMLSWLLDEEDMKVINDVKERHPQSKRLTIFWKWIVPFSPV
VLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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