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Report for CCDS34413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34413.1 Public Homo sapiens 6 HSPA1L 24 110 108 CCDS HistoryNCBI Gene:3305Re-query CCDS DB by CCDS ID:34413.1Re-query CCDS DB by GeneID:3305See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 34413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375654.5 ENSP00000364805.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375654.5Link to Ensembl Protein Viewer:ENSP00000364805.4Re-query CCDS DB by Nucleotide ID:ENST00000375654Re-query CCDS DB by Protein ID:ENSP00000364805
Original member Current member NCBI NM_005527.4 NP_005518.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005527.4Link to Protein Sequence:NP_005518.3Re-query CCDS DB by Nucleotide ID:NM_005527Re-query CCDS DB by Protein ID:NP_005518Link to BLAST:NP_005518.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005518.3 641 P34931 641 100% 0 0

Chromosomal Locations for CCDS 34413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31810047 31811972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGCTACTGCCAAGGGAATCGCCATAGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCC
AGCACGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC
AGACACCGAGCGGCTCATTGGGGATGCGGCCAAGAACCAGGTAGCAATGAATCCCCAGAACACTGTTTTT
GATGCTAAACGTCTGATCGGCAGGAAATTTAATGATCCTGTTGTACAAGCAGATATGAAACTTTGGCCTT
TTCAAGTGATTAATGAAGGAGGCAAGCCCAAAGTCCTTGTGTCCTACAAAGGGGAGAATAAAGCTTTCTA
CCCTGAGGAAATCTCTTCGATGGTATTGACTAAGTTGAAGGAGACTGCTGAGGCCTTTTTGGGCCACCCT
GTCACCAATGCAGTGATTACCGTGCCAGCCTATTTCAATGACTCTCAACGTCAGGCTACTAAGGATGCAG
GTGTGATTGCTGGACTTAATGTGCTAAGAATCATCAATGAGCCCACGGCTGCTGCCATTGCCTATGGTTT
AGATAAAGGAGGTCAAGGAGAACGACATGTCCTGATTTTTGATCTGGGTGGAGGCACATTTGATGTGTCA
ATTCTGACCATAGATGATGGGATTTTTGAGGTAAAGGCCACTGCTGGGGACACTCACCTGGGTGGGGAGG
ACTTTGACAACAGGCTTGTGAGCCACTTCGTGGAGGAGTTCAAGAGGAAACACAAAAAGGACATCAGCCA
GAACAAGCGAGCCGTGAGGCGGCTGCGCACCGCCTGCGAGAGGGCCAAGAGGACCCTGTCGTCCAGCACC
CAGGCCAACCTAGAAATTGATTCACTTTATGAAGGCATTGACTTCTATACATCCATCACCAGAGCTCGAT
TTGAAGAGTTGTGTGCAGACCTGTTTAGGGGTACCCTGGAGCCTGTAGAAAAAGCGCTTCGGGATGCCAA
GATGGATAAGGCTAAAATCCATGACATTGTTTTAGTAGGGGGCTCCACCCGCATCCCCAAGGTGCAGCGG
CTGCTTCAGGACTACTTCAATGGACGTGATCTCAACAAGAGCATCAACCCTGATGAGGCCGTAGCATATG
GGGCTGCGGTACAAGCAGCCATCCTGATGGGGGACAAGTCTGAGAAGGTACAGGACCTGCTGCTGCTGGA
CGTGGCTCCCCTGTCCCTGGGGCTGGAGACGGCTGGGGGCGTGATGACTGCCCTGATAAAGCGCAACTCC
ACCATCCCCACCAAGCAGACACAGATTTTCACCACCTACTCTGACAACCAACCCGGGGTGCTGATCCAGG
TGTATGAGGGCGAGAGGGCCATGACAAAGGACAACAACCTGCTGGGGCGGTTTGACCTGACTGGAATCCC
TCCAGCACCCAGGGGAGTTCCTCAGATCGAGGTGACGTTTGACATTGATGCCAATGGTATTCTCAATGTC
ACAGCCACGGACAAGAGCACCGGCAAGGTGAACAAGATCACCATCACCAATGACAAGGGCCGCCTGAGCA
AGGAGGAGATTGAGCGCATGGTTCTGGATGCTGAGAAATATAAAGCTGAAGATGAGGTCCAGAGGGAGAA
AATTGCTGCAAAGAATGCCTTAGAATCCTATGCTTTTAACATGAAGAGTGTTGTGAGTGATGAAGGTTTG
AAGGGCAAGATTAGTGAGTCTGATAAAAATAAAATATTGGATAAATGCAACGAGCTCCTTTCGTGGCTGG
AGGTCAATCAACTGGCAGAGAAAGATGAGTTTGATCATAAGAGAAAGGAATTGGAGCAGATGTGTAACCC
TATCATCACAAAACTCTACCAAGGAGGATGCACTGGGCCTGCCTGCGGAACAGGGTATGTGCCTGGAAGG
CCTGCCACAGGCCCCACAATTGAAGAAGTAGATTAA

Translation (641 aa):
MATAKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVF
DAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTKLKETAEAFLGHP
VTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGQGERHVLIFDLGGGTFDVS
ILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSST
QANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKALRDAKMDKAKIHDIVLVGGSTRIPKVQR
LLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNS
TIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNV
TATDKSTGKVNKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGL
KGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQGGCTGPACGTGYVPGR
PATGPTIEEVD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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