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Report for CCDS13667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13667.1 Public Homo sapiens 21 B3GALT5 24 110 108 CCDS HistoryNCBI Gene:10317Re-query CCDS DB by CCDS ID:13667.1Re-query CCDS DB by GeneID:10317See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 13667.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343118.6 ENSP00000343318.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343118.6Link to Ensembl Protein Viewer:ENSP00000343318.4Re-query CCDS DB by Nucleotide ID:ENST00000343118Re-query CCDS DB by Protein ID:ENSP00000343318
Original member Current member EBI ENST00000380618.5 ENSP00000369992.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380618.5Link to Ensembl Protein Viewer:ENSP00000369992.1Re-query CCDS DB by Nucleotide ID:ENST00000380618Re-query CCDS DB by Protein ID:ENSP00000369992
Original member Current member EBI ENST00000380620.8 ENSP00000369994.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380620.8Link to Ensembl Protein Viewer:ENSP00000369994.3Re-query CCDS DB by Nucleotide ID:ENST00000380620Re-query CCDS DB by Protein ID:ENSP00000369994
Original member Current member EBI ENST00000398714.4 ENSP00000381699.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398714.4Link to Ensembl Protein Viewer:ENSP00000381699.4Re-query CCDS DB by Nucleotide ID:ENST00000398714Re-query CCDS DB by Protein ID:ENSP00000381699
Original member Current member EBI ENST00000615480.5 ENSP00000480285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615480.5Link to Ensembl Protein Viewer:ENSP00000480285.1Re-query CCDS DB by Nucleotide ID:ENST00000615480Re-query CCDS DB by Protein ID:ENSP00000480285
Original member Current member EBI ENST00000684187.2 ENSP00000506797.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684187.2Link to Ensembl Protein Viewer:ENSP00000506797.1Re-query CCDS DB by Nucleotide ID:ENST00000684187Re-query CCDS DB by Protein ID:ENSP00000506797
Original member Current member EBI ENST00000684495.1 ENSP00000507285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684495.1Link to Ensembl Protein Viewer:ENSP00000507285.1Re-query CCDS DB by Nucleotide ID:ENST00000684495Re-query CCDS DB by Protein ID:ENSP00000507285
Original member Current member EBI ENST00000682542.1 ENSP00000507453.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682542.1Link to Ensembl Protein Viewer:ENSP00000507453.1Re-query CCDS DB by Nucleotide ID:ENST00000682542Re-query CCDS DB by Protein ID:ENSP00000507453
Original member Current member EBI ENST00000683344.1 ENSP00000508165.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683344.1Link to Ensembl Protein Viewer:ENSP00000508165.1Re-query CCDS DB by Nucleotide ID:ENST00000683344Re-query CCDS DB by Protein ID:ENSP00000508165
Original member Current member NCBI NM_001278650.2 NP_001265579.1 Accepted alive Link to Nucleotide Sequence:NM_001278650.2Link to Protein Sequence:NP_001265579.1Re-query CCDS DB by Nucleotide ID:NM_001278650Re-query CCDS DB by Protein ID:NP_001265579Link to BLAST:NP_001265579.1
Original member Current member NCBI NM_001356336.2 NP_001343265.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001356336.2Link to Protein Sequence:NP_001343265.1Re-query CCDS DB by Nucleotide ID:NM_001356336Re-query CCDS DB by Protein ID:NP_001343265Link to BLAST:NP_001343265.1
Original member Current member NCBI NM_001356338.2 NP_001343267.1 Accepted alive Link to Nucleotide Sequence:NM_001356338.2Link to Protein Sequence:NP_001343267.1Re-query CCDS DB by Nucleotide ID:NM_001356338Re-query CCDS DB by Protein ID:NP_001343267Link to BLAST:NP_001343267.1
Original member Current member NCBI NM_001356339.2 NP_001343268.1 Accepted alive Link to Nucleotide Sequence:NM_001356339.2Link to Protein Sequence:NP_001343268.1Re-query CCDS DB by Nucleotide ID:NM_001356339Re-query CCDS DB by Protein ID:NP_001343268Link to BLAST:NP_001343268.1
Original member Current member NCBI NM_006057.3 NP_006048.1 Accepted alive Link to Nucleotide Sequence:NM_006057.3Link to Protein Sequence:NP_006048.1Re-query CCDS DB by Nucleotide ID:NM_006057Re-query CCDS DB by Protein ID:NP_006048Link to BLAST:NP_006048.1
Original member Current member NCBI NM_033170.3 NP_149360.1 Accepted alive Link to Nucleotide Sequence:NM_033170.3Link to Protein Sequence:NP_149360.1Re-query CCDS DB by Nucleotide ID:NM_033170Re-query CCDS DB by Protein ID:NP_149360Link to BLAST:NP_149360.1
Original member Current member NCBI NM_033171.3 NP_149361.1 Accepted alive Link to Nucleotide Sequence:NM_033171.3Link to Protein Sequence:NP_149361.1Re-query CCDS DB by Nucleotide ID:NM_033171Re-query CCDS DB by Protein ID:NP_149361Link to BLAST:NP_149361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265579.1 310 Q9Y2C3 310 100% 0 0
NP_001343265.1 310 Q9Y2C3 310 100% 0 0
NP_001343267.1 310 Q9Y2C3 310 100% 0 0
NP_001343268.1 310 Q9Y2C3 310 100% 0 0
NP_006048.1 310 Q9Y2C3 310 100% 0 0
NP_149360.1 310 Q9Y2C3 310 100% 0 0
NP_149361.1 310 Q9Y2C3 310 100% 0 0

Chromosomal Locations for CCDS 13667.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39660560 39661492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCTTTCCCGAAGATGAGATTGATGTATATTTGCCTTCTGGTTCTGGGGGCTCTTTGTTTGTATTTTA
GCATGTACAGTCTAAATCCTTTCAAAGAACAGTCCTTTGTTTACAAGAAAGACGGGAACTTCCTTAAGCT
CCCAGATACAGACTGCAGGCAGACACCTCCCTTCCTCGTCCTGCTGGTGACCTCATCCCACAAACAGTTG
GCTGAGCGCATGGCCATCCGGCAGACGTGGGGGAAAGAGAGGATGGTGAAGGGAAAGCAGCTGAAGACAT
TCTTCCTCCTGGGGACCACCAGCAGTGCAGCGGAAACGAAAGAGGTGGACCAGGAGAGCCAGCGACACGG
GGACATTATCCAGAAGGATTTCCTAGACGTCTATTACAATCTGACCCTGAAGACCATGATGGGCATAGAA
TGGGTCCATCGCTTTTGTCCTCAGGCGGCGTTTGTGATGAAAACAGACTCAGACATGTTCATCAATGTTG
ACTATCTGACTGAACTGCTTCTGAAGAAAAACAGAACAACCAGGTTTTTCACTGGCTTCTTGAAACTCAA
TGAGTTTCCCATCAGGCAGCCATTCAGCAAGTGGTTTGTCAGTAAATCTGAATATCCGTGGGACAGGTAC
CCACCATTCTGCTCCGGCACCGGCTACGTGTTTTCTGGCGACGTGGCGAGTCAGGTGTACAATGTCTCCA
AGAGCGTCCCATACATTAAACTGGAAGACGTGTTTGTGGGGCTCTGCCTCGAAAGGCTGAACATCAGATT
GGAGGAGCTCCACTCCCAGCCGACCTTTTTTCCAGGGGGCTTACGCTTCTCCGTATGCCTCTTCAGGAGG
ATCGTGGCCTGCCACTTCATCAAGCCTCGGACTCTCTTGGACTACTGGCAGGCTCTAGAGAATTCCCGGG
GGGAAGATTGTCCGCCTGTCTGA

Translation (310 aa):
MAFPKMRLMYICLLVLGALCLYFSMYSLNPFKEQSFVYKKDGNFLKLPDTDCRQTPPFLVLLVTSSHKQL
AERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIE
WVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRY
PPFCSGTGYVFSGDVASQVYNVSKSVPYIKLEDVFVGLCLERLNIRLEELHSQPTFFPGGLRFSVCLFRR
IVACHFIKPRTLLDYWQALENSRGEDCPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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