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Report for CCDS18029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18029.1 Public Mus musculus 4 Rars2 23 108 98 CCDS HistoryNCBI Gene:109093Re-query CCDS DB by CCDS ID:18029.1Re-query CCDS DB by GeneID:109093See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029968.13 ENSMUSP00000029968.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029968.13Link to Ensembl Protein Viewer:ENSMUSP00000029968.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029968Re-query CCDS DB by Protein ID:ENSMUSP00000029968
Original member Current member NCBI NM_181406.4 NP_852071.2 Accepted alive Link to Nucleotide Sequence:NM_181406.4Link to Protein Sequence:NP_852071.2Re-query CCDS DB by Nucleotide ID:NM_181406Re-query CCDS DB by Protein ID:NP_852071Link to BLAST:NP_852071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852071.2 578 Q3U186 578 100% 0 0

Chromosomal Locations for CCDS 18029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 34614991 34615026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34618554 34618627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34623411 34623513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34625401 34625484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34630473 34630570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34633658 34633713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34636952 34637035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34639245 34639321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34645697 34645855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34646508 34646614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34647786 34647881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34650191 34650251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34652132 34652208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34654810 34654934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34656006 34656073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34656153 34656262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34656768 34656863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34657167 34657241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34659491 34659554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34659984 34660070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCGTGTGGCTTTCGTAGGTCGATCGCCTGTCAGCTTTCCAGAGTATTGGCTCTTCCACCAGAAAGCT
TGATCAAGTCAATATCTGCTGTTCCAGTTTCAAAAAAAGAAGAGGTGGCAGATTTTCAGCTTTCGGTGGA
TTCCTTACTAGAAGACAACAATCACAAGTCACAGGTAGACACTCAAGACCAAGCCAGGAGATTGGCAGAG
AAGCTTAAGTGTGATACAGTGGTGACAGCCATCAGTGCTGGCCCAAGGACTCTAAATTTCAAAATAAACA
GAGAATTATTAACAAAGGCAGTATTGCAACAAGTTACTGAAGATGGCTGTAAATATGGGTTAAAAAGTGA
ACTTTTCTCAGATCTTCCCAAGAAGAGGATTGTGGTTGAATTCAGTTCACCTAATATTGCCAAAAAATTT
CATGTTGGACATTTGCGCTCCACCATCATAGGAAATTTTATAGCAAATCTAAAAGAAGCTTTAGGACATC
AAGTAACAAGAATAAATTACATTGGAGATTGGGGCATGCAGTTTGGTCTGCTGGGAACTGGTTTCCAGCT
GTTTGGCTATGAAGAGAAACTCCAGACCAATCCTTTACAGCATCTCTTTGATGTTTATGTACAAGTTAAT
AAAGAAGCAACAGATGATAAAAATGTAACAAAATTGGCACACGAGTTCTTCCACCGACTAGAAATGGGTG
ACACGCAGGCACTGTCACTGTGGCAGAGATTCCGGGACTTGAGCATTGAAGAGTACACCCAGATTTACAA
GCGTCTTGGAATATACTTTGATGAATATTCAGGAGAATCATTTTATCGTGAAAAATCTCAAGATGTCTTA
AAGTTGCTTGACAGCAAAGGACTTCTGCAGAAAACAGCGGAGGGAAATGTTGTAGTAGATCTCTCTGGGA
CTGGTGACCTCTCTTCTGTCTGCACTGTGATGCGAAGTGATGGGACCTCTCTCTATGCCACCAGGGACCT
TGCAGCTGCTATACATCGCATGGACAAGTACAATTTTGACACAATGATTTATGTCGCAGACAAAGGGCAA
AGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGCTACGACTGGGCGGAAAGGTGCCAGC
ATGTCCCCTTTGGGATAGTAAAGGGGATGAAGACTCGAAGAGGAGGGGTCACTTTTCTGGAAGATGTCTT
AAATGAGGTTCAATCAAGGATGCTACAGAACATGGCTTCCATTAAGACCACGAAACAATTGGAGAACCCT
CAGGAGACGGCAGAGAGAGTGGGGCTTGCCGCCGTCATCATCCAGGACTTCAGAGGCACTCTCTTATCTG
ACTATCAGTTCAGTTGGGATCGTGTTTTCCAGAGCCGTGGGGACACTGGAGTCTTCCTGCAGTACACCCA
TGCCCGCCTCTGTAGTTTGGAAGAGACTTTTGGATGTGGGTATCTCAATGACTCCAATGTTGCTTGTTTA
CAAGAGCCGCAGTCTGTTTCAATTCTCCAGCATCTTCTCAGGTTTGATGAGGTACTTTACCTGTCATCTC
AGGACCTACAGCCGAAGCACATCGTTAGCTACCTCCTAACTCTAAGTCACCTTGCAGCTGTGGCACATAA
AACACTCCAGGTGAAAGACAGTCCTCCTGATGTGGCTGGGGCCAGACTTCACCTTTTCAAAGCTGTCCGT
TCTGTCTTAGCCAATGGAATGAAACTTCTTGGAATTACACCTGTATGTAGAATGTAA

Translation (578 aa):
MACGFRRSIACQLSRVLALPPESLIKSISAVPVSKKEEVADFQLSVDSLLEDNNHKSQVDTQDQARRLAE
KLKCDTVVTAISAGPRTLNFKINRELLTKAVLQQVTEDGCKYGLKSELFSDLPKKRIVVEFSSPNIAKKF
HVGHLRSTIIGNFIANLKEALGHQVTRINYIGDWGMQFGLLGTGFQLFGYEEKLQTNPLQHLFDVYVQVN
KEATDDKNVTKLAHEFFHRLEMGDTQALSLWQRFRDLSIEEYTQIYKRLGIYFDEYSGESFYREKSQDVL
KLLDSKGLLQKTAEGNVVVDLSGTGDLSSVCTVMRSDGTSLYATRDLAAAIHRMDKYNFDTMIYVADKGQ
RRHFQQVFQMLKIMGYDWAERCQHVPFGIVKGMKTRRGGVTFLEDVLNEVQSRMLQNMASIKTTKQLENP
QETAERVGLAAVIIQDFRGTLLSDYQFSWDRVFQSRGDTGVFLQYTHARLCSLEETFGCGYLNDSNVACL
QEPQSVSILQHLLRFDEVLYLSSQDLQPKHIVSYLLTLSHLAAVAHKTLQVKDSPPDVAGARLHLFKAVR
SVLANGMKLLGITPVCRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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