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Report for CCDS21013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21013.1 Public Mus musculus 7 Mia 23 108 98 CCDS HistoryNCBI Gene:12587Re-query CCDS DB by CCDS ID:21013.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 21013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071986.12 ENSMUSP00000071876.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071986.12Link to Ensembl Protein Viewer:ENSMUSP00000071876.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071986Re-query CCDS DB by Protein ID:ENSMUSP00000071876
Original member Current member NCBI NM_019394.3 NP_062267.2 Accepted alive Link to Nucleotide Sequence:NM_019394.3Link to Protein Sequence:NP_062267.2Re-query CCDS DB by Nucleotide ID:NM_019394Re-query CCDS DB by Protein ID:NP_062267Link to BLAST:NP_062267.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062267.2 130 Q61865 130 100% 0 0

Chromosomal Locations for CCDS 21013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27179811 27179834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27180169 27180279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27180700 27180833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27180922 27181045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGTGTGGTCCCCAGTGCTCCTTGGCATCGTCGTCTTGTCTGTTTTTTCAGGGCCTAGCAGGGCTGATC
GAGCTATGCCCAAGCTGGCTGACTGGAAGCTGTGTGCGGACGAGGAATGCAGCCATCCTATCTCCATGGC
TGTGGCCCTCCAGGACTACGTGGCCCCTGATTGCCGCTTCTTGACTATATATAGGGGCCAAGTGGTGTAT
GTCTTCTCCAAGTTGAAGGGCCGTGGGCGCCTTTTCTGGGGAGGCAGTGTTCAGGGAGGTTACTATGGAG
ACCTGGCAGCCCGCCTGGGCTATTTCCCCAGTAGCATTGTCCGGGAGGACCTGACTCTGAAACCTGGCAA
AATTGATATGAAGACCGATCAATGGGATTTCTACTGCCAGTGA

Translation (130 aa):
MVWSPVLLGIVVLSVFSGPSRADRAMPKLADWKLCADEECSHPISMAVALQDYVAPDCRFLTIYRGQVVY
VFSKLKGRGRLFWGGSVQGGYYGDLAARLGYFPSSIVREDLTLKPGKIDMKTDQWDFYCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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