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Report for CCDS40044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40044.1 Public Mus musculus 7 Tomt 23 108 98 CCDS HistoryNCBI Gene:791260Re-query CCDS DB by CCDS ID:40044.1Re-query CCDS DB by GeneID:791260See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106969.8 ENSMUSP00000102582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106969.8Link to Ensembl Protein Viewer:ENSMUSP00000102582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106969Re-query CCDS DB by Protein ID:ENSMUSP00000102582
Original member Current member EBI ENSMUST00000106970.2 ENSMUSP00000102583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106970.2Link to Ensembl Protein Viewer:ENSMUSP00000102583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106970Re-query CCDS DB by Protein ID:ENSMUSP00000102583
Original member Current member NCBI NM_001081679.1 NP_001075148.1 Accepted alive Link to Nucleotide Sequence:NM_001081679.1Link to Protein Sequence:NP_001075148.1Re-query CCDS DB by Nucleotide ID:NM_001081679Re-query CCDS DB by Protein ID:NP_001075148Link to BLAST:NP_001075148.1
Original member Current member NCBI NM_001282088.1 NP_001269017.1 Accepted alive Link to Nucleotide Sequence:NM_001282088.1Link to Protein Sequence:NP_001269017.1Re-query CCDS DB by Nucleotide ID:NM_001282088Re-query CCDS DB by Protein ID:NP_001269017Link to BLAST:NP_001269017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075148.1 258 A1Y9I9 258 100% 0 0
NP_001269017.1 258 A1Y9I9 258 100% 0 0

Chromosomal Locations for CCDS 40044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101900303 101900623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101901102 101901298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101902013 101902271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGTCCCCTGCCATTGCACTGGCATTCCTGCCACTCGTGGTAACACTGCTGGTGAGATACCGGCACCATT
TCCGACTGCTGGTGCGTACAGTCCTGCTGAGAGGATTTCGAGACTGCCTGTCAGGACTTCGGATTGAGGA
GCGGGCTTTCAGCTATGTGCTCACCCATGCCCTGCCTGGAGACCCTGGTCACATCCTCACCACGCTTGAC
CATTGGAGCAGCTGCTGCGAGTACCTGAGCCACATGGGCCCTGTTAAAGGTCAGATTCTGATGCGGCTGG
TGGAAGAGAAGGCCCCTGCTTGTGTGCTGGAGCTGGGCACATACTGTGGATACTCTACACTGCTTATTGC
GCGAGCCTTGCCCCCTGGAAGTCGCCTTCTCACTGTGGAGCGGGACTCACGTACAGCAGCAGTGGCTGAA
AAAGTCATCCGGCTGGCAGGCTTCGATGAGCAAATGGTGGAGCTCATTGCAGGCAGCTCAGAGGAAGTGA
TCCCACGCCTAAGAGCTCAGCACCAGCTGAATCGTGCAGATCTGGTGCTCCTGGCACACCGACCTCGGTA
TTACTTAAGGGATCTGCAGCTACTGGAGGCCCATGCTCTGCTCCCACATGGCGCCACTGTATTGGCTGAC
CATGTGCTTTTTCCTGGTGCACCCCGCTTCCTACAGTACACCAAGAGCTGTGGTCGCTATCGCTGCCGCC
TTCACCACACCAGCCTCCCAGACTTCCCTGCCATTAAAGATGGCATAGCCCAACTCACCTATACTGGACC
CGGCTGA

Translation (258 aa):
MSPAIALAFLPLVVTLLVRYRHHFRLLVRTVLLRGFRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLD
HWSSCCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARALPPGSRLLTVERDSRTAAVAE
KVIRLAGFDEQMVELIAGSSEEVIPRLRAQHQLNRADLVLLAHRPRYYLRDLQLLEAHALLPHGATVLAD
HVLFPGAPRFLQYTKSCGRYRCRLHHTSLPDFPAIKDGIAQLTYTGPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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