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Report for CCDS33040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33040.1 Public Homo sapiens 19 IRGQ 24 110 108 CCDS HistoryNCBI Gene:126298Re-query CCDS DB by CCDS ID:33040.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422989.6 ENSP00000387535.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422989.6Link to Ensembl Protein Viewer:ENSP00000387535.1Re-query CCDS DB by Nucleotide ID:ENST00000422989Re-query CCDS DB by Protein ID:ENSP00000387535
Original member Current member EBI ENST00000602269.2 ENSP00000472250.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602269.2Link to Ensembl Protein Viewer:ENSP00000472250.1Re-query CCDS DB by Nucleotide ID:ENST00000602269Re-query CCDS DB by Protein ID:ENSP00000472250
Original member Current member NCBI NM_001007561.3 NP_001007562.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007561.3Link to Protein Sequence:NP_001007562.1Re-query CCDS DB by Nucleotide ID:NM_001007561Re-query CCDS DB by Protein ID:NP_001007562Link to BLAST:NP_001007562.1
Original member Current member NCBI NM_001388309.1 NP_001375238.1 Accepted alive Link to Nucleotide Sequence:NM_001388309.1Link to Protein Sequence:NP_001375238.1Re-query CCDS DB by Nucleotide ID:NM_001388309Re-query CCDS DB by Protein ID:NP_001375238Link to BLAST:NP_001375238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007562.1 623 Q8WZA9 623 100% 0 0
NP_001375238.1 623 Q8WZA9 623 100% 0 0

Chromosomal Locations for CCDS 33040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43592026 43593367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43594809 43595338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGCCTCCGCCGCAGGGTGACGTGACCGCCTTGTTCCTGGGGCCTCCGGGCTTGGGGAAGTCCGCGCTGA
TCGCAGCGCTGTGCGACAAGGATGTGGAGACGCTCGAGGCCCCCGAGGGACGGCCGGACTCCGGGGTTCC
CAGCCTAAGAGCTGCGGGCCCAGGCCTTTTTCTGGGCGAGCTGAGCTGCCCACCCGCAGCGCCGGGGCCC
TGGGCGGCGGAAGCCAACGTGCTGGTACTGGTGCTGCCCGGACCCGAGGGGAACGGGGAACCGTTGGCTC
CAGCCCTGGGAGAGGCAGCGCTGGCCGCCCTGGCCCGAGGGACCCCGCTACTGGCTGTGCGGAACCTCCG
TCCTGGGGATTCACAGACTGCCGCCCAGGCCCGTGATCAGACAGCAGCTCTGCTGAACAGCGCGGGGTTA
GGAGCTGCGGATCTGTTTGTGCTACCGGCGAACTGCGGCAGCAGCGACGGCTGCGAGGAGCTAGAGCGCC
TCCGGGCGGCGCTGCAGAGCCAGGCAGAAGCGCTGCGGAGGCTCCTGCCACCGGCGCAGGATGGCTTCGA
GGTGTTGGGTGCAGCAGAGCTAGAGGCTGTGCGTGAGGCCTTTGAGACCGGCGGCCTTGAGGCTGCGCTG
TCGTGGGTGCGCTCAGGCCTGGAGCGCCTGGGCAGCGCACGGCTAGACCTGGCCGTGGCTGGCAAGGCTG
ACGTGGGCCTTGTGGTGGACATGCTGCTTGGATTGGATCCTGGCGACCCAGGCGCTGCGCCTGCTTCGGT
CCCCACAGCACCCACTCCCTTCCCAGCCCCAGAGCGCCCGAATGTGGTGCTCTGGACCGTGCCTCTGGGC
CACACGGGCACTGCCACCACCGCGGCCGCCGCCTCTCACCCAACGCACTACGACGCCCTCATCCTCGTCA
CCCCTGGGGCCCCCACTGAGAAGGACTGGGCCCAGGTCCAGGCCTTGCTGCTACCAGATGCGCCTCTTGT
CTGCGTGCGCACAGACGGCGAGGGCGAGGATCCGGAGTGTCTGGGAGAAGGCAAGATGGAGAATCCCAAG
GGCGAGAGCTTAAAGAACGCAGGTGGAGGGGGATTGGAGAATGCACTCAGTAAGGGAAGGGAGAAATGTA
GCGCTGGATCGCAGAAAGCAGGCAGCGGGGAAGGTCCTGGGAAAGCTGGCAGCGAGGGTTTGCAGCAGGT
TGTCGGCATGAAGAAATCAGGTGGTGGCGACTCAGAGCGGGCCGCTGCGTTAAGCCCGGAGGACGAGACG
TGGGAGGTGCTGGAGGAGGCGCCGCCGCCAGTGTTCCCCCTACGGCCTGGCGGACTCCCAGGGCTATGCG
AATGGCTGCGGCGAGCGCTCCCCCCAGCCCAGGCAGGGGCACTGCTGCTGGCGTTGCCACCAGCATCTCC
CAGCGCTGCCCGAACCAAGGCTGCGGCGTTGCGAGCCGGGGCGTGGAGGCCAGCTCTGCTGGCTAGTCTG
GCGGCGGCGGCGGCACCACTCCCAGGGCTGGGCTGGGCATGCGACGTGGCACTTCTGCGGGGTCAGCTGG
CGGAGTGGCGACGGGGCCTGGGGCTGGAACCCACGGCACTGGCTCGACGTGAGCGTGCCCTGGGCCTGGC
TTCTGGAGAGCTGGCAGCGCGCGCTCATTTCCCAGGCCCGGTGACGCGCGCCGAGGTGGAAGCAAGACTG
GGCGCCTGGGCGGGCGAGGGCACTGCTGGGGGCGCAGCACTGGGGGCTCTCTCCTTCCTGTGGCCTGCGG
GTGGTGCAGCGGCGACAGGTGGCCTGGGCTACCGAGCGGCTCACGGCGTCCTGCTGCAGGCTCTCGATGA
GATGCGGGCTGATGCTGAGGCTGTGCTGGCACCCCCTGAGCCTGCCCAGTGA

Translation (623 aa):
MPPPQGDVTALFLGPPGLGKSALIAALCDKDVETLEAPEGRPDSGVPSLRAAGPGLFLGELSCPPAAPGP
WAAEANVLVLVLPGPEGNGEPLAPALGEAALAALARGTPLLAVRNLRPGDSQTAAQARDQTAALLNSAGL
GAADLFVLPANCGSSDGCEELERLRAALQSQAEALRRLLPPAQDGFEVLGAAELEAVREAFETGGLEAAL
SWVRSGLERLGSARLDLAVAGKADVGLVVDMLLGLDPGDPGAAPASVPTAPTPFPAPERPNVVLWTVPLG
HTGTATTAAAASHPTHYDALILVTPGAPTEKDWAQVQALLLPDAPLVCVRTDGEGEDPECLGEGKMENPK
GESLKNAGGGGLENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSGGGDSERAAALSPEDET
WEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPSAARTKAAALRAGAWRPALLASL
AAAAAPLPGLGWACDVALLRGQLAEWRRGLGLEPTALARRERALGLASGELAARAHFPGPVTRAEVEARL
GAWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMRADAEAVLAPPEPAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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