NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30857.1 Public Homo sapiens 1 TCHHL1 24 110 108 CCDS HistoryNCBI Gene:126637Re-query CCDS DB by CCDS ID:30857.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368806.2 ENSP00000357796.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368806.2Link to Ensembl Protein Viewer:ENSP00000357796.1Re-query CCDS DB by Nucleotide ID:ENST00000368806Re-query CCDS DB by Protein ID:ENSP00000357796
Original member Current member NCBI NM_001008536.2 NP_001008536.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008536.2Link to Protein Sequence:NP_001008536.1Re-query CCDS DB by Nucleotide ID:NM_001008536Re-query CCDS DB by Protein ID:NP_001008536Link to BLAST:NP_001008536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008536.1 904 Q5QJ38 904 100% 0 0

Chromosomal Locations for CCDS 30857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152084967 152087543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152088006 152088143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGCCTCAGCTCCTGAGAAATGTCCTCTGTGTAATTGAGACATTCCACAAATATGCCAGTGAGGACAGTA
ACGGGGCAACACTGACTGGCAGAGAGCTGAAACAACTCATCCAGGGCGAGTTTGGGGACTTTTTTCAGCC
CTGTGTCCTTCATGCTGTGGAAAAAAATTCAAATCTTCTGAATATTGACAGTAATGGCATCATCAGTTTT
GATGAATTTGTTCTTGCAATCTTCAACTTGTTGAACCTCTGTTATCTTGACATAAAATCATTACTAAGTT
CTGAACTAAGACAGGTGACTAAACCAGAGAAGGAGAAGCTAGATGATGTGGATGTTCAGGCAACCACCGG
AGATGGTCAGTGGACAGTGGGAACTTCACCAACTCAAGAAAAGAGGATGCTTCCTTCAGGAATGGCATCA
TCATCTCAGCTCATCCCTGAAGAAAGTGGAGCAGTTGGAAATAACAGAGTGGACCCATGGAGAGAAGCCA
AGACTCACAACTTTCCAGGAGAAGCATCTGAACACAATGATCCTAAGAACAAACACCTGGAAGGAGATGA
ACAAAGTCAGGAAGTGGCTCAAGATATACAAACAACAGAAGACAATGAAGGCCAACTTAAGACAAATAAG
CCAATGGCAGGATCAAAAAAGACCAGCAGTCCCACAGAGAGGAAGGGACAAGATAAGGAGATCTCCCAGG
AAGGAGATGAACCAGCCAGAGAGCAAAGTGTTTCCAAGATAAGAGACCAGTTTGGAGAACAGGAAGGAAA
CTTGGCAACCCAAAGTTCACCACCAAAAGAAGCAACACAAAGACCATGTGAAGATCAGGAAGTTAGAACA
GAAAAGGAAAAACACTCTAATATACAAGAACCACCCCTACAAAGAGAAGATGAGCCCAGTTCACAGCATG
CTGACCTGCCAGAACAAGCTGCTGCCAGGTCACCATCTCAGACACAGAAATCAACTGATTCCAAGGATGT
CTGTAGAATGTTTGACACTCAAGAACCAGGAAAGGATGCTGACCAGACACCAGCTAAAACAAAGAATTTG
GGTGAACCTGAGGATTATGGCAGAACATCTGAGACCCAAGAAAAAGAATGTGAAACAAAGGACCTGCCAG
TCCAATATGGTAGCAGAAATGGTTCAGAAACATCTGACATGAGAGATGAAAGGAAAGAGAGGAGAGGTCC
TGAGGCCCATGGAACAGCAGGGCAGAAAGAACGTGACAGAAAAACTCGGCCACTAGTCCTGGAAACCCAA
ACACAGGATGGGAAGTATCAGGAACTCCAAGGATTATCAAAATCAAAAGATGCTGAAAAAGGTTCTGAGA
CACAATATCTAAGCTCAGAAGGAGGAGATCAGACTCACCCTGAACTTGAAGGAACAGCAGTCTCAGGAGA
AGAGGCAGAACACACCAAAGAAGGCACAGCAGAAGCATTTGTGAACAGCAAAAACGCACCTGCAGCAGAA
AGGACACTGGGGGCAAGAGAAAGAACACAAGATTTAGCACCACTTGAGAAGCAGTCTGTAGGAGAAAATA
CTAGGGTCACCAAGACTCATGACCAACCAGTTGAGGAGGAGGATGGTTACCAGGGGGAGGACCCTGAGTC
ACCATTCACACAGAGTGATGAGGGGTCTTCTGAAACTCCCAACAGCCTGGCTTCAGAGGAAGGCAATAGC
AGCTCAGAGACAGGTGAACTGCCTGTGCAAGGGGACTCCCAGAGTCAAGGGGACCAACATGGAGAGTCTG
TGCAAGGAGGTCACAATAATAACCCAGATACCCAGAGGCAGGGAACACCTGGTGAGAAAAACAGAGCTCT
GGAGGCAGTGGTACCAGCAGTCAGAGGAGAGGATGTACAGCTCACAGAGGACCAGGAACAGCCTGCCAGA
GGAGAACACAAGAATCAAGGCCCAGGGACCAAAGGCCCAGGTGCAGCTGTGGAGCCCAATGGACACCCAG
AAGCACAGGAATCCACAGCAGGAGATGAAAATAGAAAGTCCCTGGAAATAGAGATCACAGGTGCCCTGGA
TGAAGACTTCACTGACCAGCTTTCCCTAATGCAGCTCCCTGGAAAGGGAGATAGCAGAAATGAATTAAAG
GTCCAAGGCCCAAGTAGCAAAGAAGAGAAAGGAAGAGCAACAGAGGCCCAGAATACTCTGTTAGAAAGTC
TAGATGAGGACAATTCAGCCTCCCTCAAGATACAACTTGAAACAAAGGAACCTGTAACATCAGAGGAGGA
AGATGAAAGTCCCCAAGAGCTGGCAGGAGAAGGTGGTGACCAAAAAAGTCCAGCCAAGAAAGAGCACAAT
TCTTCAGTCCCCTGGTCAAGTCTTGAAAAGCAGATGCAGAGAGACCAAGAGCCCTGTTCTGTGGAGAGGG
GTGCAGTCTATTCCAGTCCACTATACCAGTACCTACAGGAGAAGATACTGCAGCAAACAAATGTAACCCA
AGAGGAGCATCAAAAGCAAGTTCAGATAGCCCAGGCATCAGGCCCAGAGCTTTGCAGTGTATCCCTCACC
AGTGAGATCTCAGATTGTTCTGTCTTTTTCAACTACAGCCAAGCATCACAACCATATACCAGGGGACTTC
CACTTGATGAGAGTCCTGCTGGTGCACAGGAAACACCAGCTCCCCAGGCCTTGGAAGATAAGCAAGGTCA
CCCTCAGAGAGAGAGGCTGGTACTACAAAGGGAGGCAAGCACCACAAAGCAATGA

Translation (904 aa):
MPQLLRNVLCVIETFHKYASEDSNGATLTGRELKQLIQGEFGDFFQPCVLHAVEKNSNLLNIDSNGIISF
DEFVLAIFNLLNLCYLDIKSLLSSELRQVTKPEKEKLDDVDVQATTGDGQWTVGTSPTQEKRMLPSGMAS
SSQLIPEESGAVGNNRVDPWREAKTHNFPGEASEHNDPKNKHLEGDEQSQEVAQDIQTTEDNEGQLKTNK
PMAGSKKTSSPTERKGQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLATQSSPPKEATQRPCEDQEVRT
EKEKHSNIQEPPLQREDEPSSQHADLPEQAAARSPSQTQKSTDSKDVCRMFDTQEPGKDADQTPAKTKNL
GEPEDYGRTSETQEKECETKDLPVQYGSRNGSETSDMRDERKERRGPEAHGTAGQKERDRKTRPLVLETQ
TQDGKYQELQGLSKSKDAEKGSETQYLSSEGGDQTHPELEGTAVSGEEAEHTKEGTAEAFVNSKNAPAAE
RTLGARERTQDLAPLEKQSVGENTRVTKTHDQPVEEEDGYQGEDPESPFTQSDEGSSETPNSLASEEGNS
SSETGELPVQGDSQSQGDQHGESVQGGHNNNPDTQRQGTPGEKNRALEAVVPAVRGEDVQLTEDQEQPAR
GEHKNQGPGTKGPGAAVEPNGHPEAQESTAGDENRKSLEIEITGALDEDFTDQLSLMQLPGKGDSRNELK
VQGPSSKEEKGRATEAQNTLLESLDEDNSASLKIQLETKEPVTSEEEDESPQELAGEGGDQKSPAKKEHN
SSVPWSSLEKQMQRDQEPCSVERGAVYSSPLYQYLQEKILQQTNVTQEEHQKQVQIAQASGPELCSVSLT
SEISDCSVFFNYSQASQPYTRGLPLDESPAGAQETPAPQALEDKQGHPQRERLVLQREASTTKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH