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Report for CCDS27992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27992.1 Public Mus musculus 16 Mapk1 23 108 98 CCDS HistoryNCBI Gene:26413Re-query CCDS DB by CCDS ID:27992.1Re-query CCDS DB by GeneID:26413See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069107.13 ENSMUSP00000065983.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069107.13Link to Ensembl Protein Viewer:ENSMUSP00000065983.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069107Re-query CCDS DB by Protein ID:ENSMUSP00000065983
Original member Current member EBI ENSMUST00000115731.9 ENSMUSP00000111396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115731.9Link to Ensembl Protein Viewer:ENSMUSP00000111396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115731Re-query CCDS DB by Protein ID:ENSMUSP00000111396
Original member Current member EBI ENSMUST00000232611.1 ENSMUSP00000156154.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232611.1Link to Ensembl Protein Viewer:ENSMUSP00000156154.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232611Re-query CCDS DB by Protein ID:ENSMUSP00000156154
Original member Current member NCBI NM_001038663.1 NP_001033752.1 Accepted alive Link to Nucleotide Sequence:NM_001038663.1Link to Protein Sequence:NP_001033752.1Re-query CCDS DB by Nucleotide ID:NM_001038663Re-query CCDS DB by Protein ID:NP_001033752Link to BLAST:NP_001033752.1
Original member Current member NCBI NM_001357115.1 NP_001344044.1 Accepted alive Link to Nucleotide Sequence:NM_001357115.1Link to Protein Sequence:NP_001344044.1Re-query CCDS DB by Nucleotide ID:NM_001357115Re-query CCDS DB by Protein ID:NP_001344044Link to BLAST:NP_001344044.1
Original member Current member NCBI NM_011949.3 NP_036079.1 Accepted alive Link to Nucleotide Sequence:NM_011949.3Link to Protein Sequence:NP_036079.1Re-query CCDS DB by Nucleotide ID:NM_011949Re-query CCDS DB by Protein ID:NP_036079Link to BLAST:NP_036079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033752.1 358 P63085 358 100% 0 0
NP_001344044.1 358 P63085 358 100% 0 0
NP_036079.1 358 P63085 358 100% 0 0

Chromosomal Locations for CCDS 27992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16983627 16983739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17015898 17016080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17018286 17018475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17023452 17023568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17026026 17026140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17026358 17026489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17035442 17035551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17038314 17038430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGGCGGCGGCGGCGGCGGGCCCGGAGATGGTCCGCGGGCAGGTGTTCGACGTAGGGCCGCGCTACA
CCAACCTCTCGTACATCGGAGAAGGCGCCTACGGCATGGTTTGCTCTGCTTATGATAATCTCAACAAAGT
TCGAGTTGCTATCAAGAAAATCAGTCCTTTTGAGCACCAGACCTACTGTCAAAGAACCCTAAGAGAGATA
AAAATCTTACTGCGCTTCAGACATGAGAACATCATTGGCATCAATGACATCATCCGGGCACCAACCATTG
AGCAAATGAAAGATGTATATATAGTACAGGACCTCATGGAGACGGACCTTTACAAGCTCTTGAAGACACA
GCACCTCAGCAATGACCACATCTGCTATTTTCTTTATCAGATCCTGAGAGGGCTAAAGTATATCCATTCA
GCTAACGTTCTGCACCGTGACCTCAAGCCTTCCAACCTCCTGCTGAACACCACTTGTGATCTCAAGATCT
GTGACTTTGGCCTTGCCCGTGTTGCAGATCCAGATCATGATCACACAGGGTTCTTGACAGAGTACGTAGC
CACACGTTGGTACAGAGCTCCAGAAATTATGTTGAATTCCAAGGGTTATACCAAGTCCATTGATATTTGG
TCTGTGGGCTGCATCCTGGCAGAGATGCTATCCAACAGGCCTATCTTCCCAGGAAAGCATTACCTTGACC
AGCTGAATCACATCCTGGGTATTCTTGGATCTCCATCACAGGAAGATCTGAATTGTATAATAAATTTAAA
AGCTAGAAACTATTTGCTTTCTCTCCCGCACAAAAATAAGGTGCCATGGAACAGGTTGTTCCCAAATGCT
GACTCCAAAGCTCTGGATTTACTGGATAAAATGTTGACATTTAACCCTCACAAGAGGATTGAAGTTGAAC
AGGCTCTGGCCCACCCATACCTGGAGCAGTATTATGACCCAAGTGATGAGCCCATTGCTGAAGCGCCATT
CAAGTTTGACATGGAGTTGGACGACTTACCTAAGGAGAAGCTCAAAGAACTCATTTTTGAAGAGACTGCT
AGATTCCAGCCAGGATACAGATCTTAA

Translation (358 aa):
MAAAAAAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREI
KILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS
ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIW
SVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNA
DSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETA
RFQPGYRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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