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Report for CCDS14987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14987.1 Public Mus musculus 1 Ica1l 23 108 98 CCDS HistoryNCBI Gene:70375Re-query CCDS DB by CCDS ID:14987.1Re-query CCDS DB by GeneID:70375See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027172.12 ENSMUSP00000027172.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027172.12Link to Ensembl Protein Viewer:ENSMUSP00000027172.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027172Re-query CCDS DB by Protein ID:ENSMUSP00000027172
Original member Current member EBI ENSMUST00000191251.6 ENSMUSP00000140520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191251.6Link to Ensembl Protein Viewer:ENSMUSP00000140520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191251Re-query CCDS DB by Protein ID:ENSMUSP00000140520
Original member NCBI NM_001316694.1 NP_001303623.1 Updated not alive Link to Nucleotide Sequence:NM_001316694.1Link to Protein Sequence:NP_001303623.1Re-query CCDS DB by Nucleotide ID:NM_001316694Re-query CCDS DB by Protein ID:NP_001303623
Current member NCBI NM_001316694.2 NP_001303623.1 Accepted alive Link to Nucleotide Sequence:NM_001316694.2Link to Protein Sequence:NP_001303623.1Re-query CCDS DB by Nucleotide ID:NM_001316694Re-query CCDS DB by Protein ID:NP_001303623Link to BLAST:NP_001303623.1
Original member NCBI NM_001357296.1 NP_001344225.1 Updated not alive Link to Nucleotide Sequence:NM_001357296.1Link to Protein Sequence:NP_001344225.1Re-query CCDS DB by Nucleotide ID:NM_001357296Re-query CCDS DB by Protein ID:NP_001344225
Current member NCBI NM_001357296.2 NP_001344225.1 Accepted alive Link to Nucleotide Sequence:NM_001357296.2Link to Protein Sequence:NP_001344225.1Re-query CCDS DB by Nucleotide ID:NM_001357296Re-query CCDS DB by Protein ID:NP_001344225Link to BLAST:NP_001344225.1
Original member NCBI NM_027407.4 NP_081683.3 Updated not alive Link to Nucleotide Sequence:NM_027407.4Link to Protein Sequence:NP_081683.3Re-query CCDS DB by Nucleotide ID:NM_027407Re-query CCDS DB by Protein ID:NP_081683
Current member NCBI NM_027407.5 NP_081683.3 Accepted alive Link to Nucleotide Sequence:NM_027407.5Link to Protein Sequence:NP_081683.3Re-query CCDS DB by Nucleotide ID:NM_027407Re-query CCDS DB by Protein ID:NP_081683Link to BLAST:NP_081683.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303623.1 431 Q3TY65 431 100% 0 0
NP_001344225.1 431 Q3TY65 431 100% 0 0
NP_081683.3 431 Q3TY65 431 100% 0 0

Chromosomal Locations for CCDS 14987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59991124 59991239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59997451 59997711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60003656 60003705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60006234 60006319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60007808 60007906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60010109 60010234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60013820 60014018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60015712 60015835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60022578 60022650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60028068 60028229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGATTCCTCTGAGCAACTCAGAGCAGAAGATAACCAGTCAGTAGTGAGCAGAATGCAGAAGAACTACT
GGAGAACTAAACAAGTCTTTATCAAAGCGACGGGAAAGAAGGAGGACGAGCATGTGGTTGCATCCGATGC
AGAACTGGACGCTAAGTTGGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTTGTGAAGATAGTT
GAGAAATACCAGCTAAGACTCAACGTTATATCAGAGGAAGAAAATGAACTAGGACTCTTTTTAAAGTTTC
AAGCAGAGCGGGATTCGACTCAAGCTGGCGAAATGATGGATGCTGCTGGCAAGGCCCTCTGTTCTTCAGC
CAAGCAAAGATTGGCCTTGTGTACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACATTCAGTCAGAGG
GCCATTTCTGACACCTTGGTGACCATTAACCGCATGGAGCGGGCCCGCACAGAGTACAGAGGAGCCCTGC
TGTGGATGAAAGATGCATCGCAGGAACTTGACCCAGACACCTTCAAACAAATGGAAAAGTTCAGAAAAGT
ACAGAATCAAGTGAGAAACAGCAAAGATTCTTTTGACAAGTTAAAGAAGGATGTCTGCCAGAAAGTGGAC
TTGCTGGGAGCTAGTCGCTGCAATATGCTGTCTCACTCACTCACTACCTACCAGAGAACACTGCTTGGGT
TCTGGGAGAAAACAGCTCAGATGATGACCCAAATCCAAGAGGCCTGCGCTGGCTTTCATCCGTACGACTT
CCTGGCTCTCAAGCGACTACAAGACACTCCAGGAAATCTCACTGCAGACTGCACAGAGGGACAAACAGAA
GGCAGTTGTCTCACTACAGACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGGAAGAGAGATTTGAAA
GAGAACCAGCAGTTGCAAGAGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAAGAATTCTC
ATTTCTGAACAGCCTCCTAAGCCCCACTTCTTCAAGTGCTAGTGAGTTTACACAGGAATGCCAGCCCGCG
TGTGGGAGCCCCTGCACTGGCCTCACATCCCAGGAGCCTTCAGTAGGACCCGGGTCTCTCACTTCCTCCT
CACAGTTCCTTCCTTCACAGCTCTTTGACCTTGGCCTTCACGCTGATGGAGCTTTCAACACCCCCAACAA
TGGTAACCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACTTGGGTCCGCTCTCAAACCCAGATGCC
ATTGGACACTCAGATGACGAGCTTCTGAATGCCTGA

Translation (431 aa):
MDSSEQLRAEDNQSVVSRMQKNYWRTKQVFIKATGKKEDEHVVASDAELDAKLEVFHSIQETCNELVKIV
EKYQLRLNVISEEENELGLFLKFQAERDSTQAGEMMDAAGKALCSSAKQRLALCTPLSRLKQEVATFSQR
AISDTLVTINRMERARTEYRGALLWMKDASQELDPDTFKQMEKFRKVQNQVRNSKDSFDKLKKDVCQKVD
LLGASRCNMLSHSLTTYQRTLLGFWEKTAQMMTQIQEACAGFHPYDFLALKRLQDTPGNLTADCTEGQTE
GSCLTTDLNKVALSEEEEEERFEREPAVARALPRDSLEGDDFEKEFSFLNSLLSPTSSSASEFTQECQPA
CGSPCTGLTSQEPSVGPGSLTSSSQFLPSQLFDLGLHADGAFNTPNNGNQDMSAWFNLFADLGPLSNPDA
IGHSDDELLNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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