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Report for CCDS22352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22352.1 Public Mus musculus 8 Pbx4 23 108 98 CCDS HistoryNCBI Gene:80720Re-query CCDS DB by CCDS ID:22352.1Re-query CCDS DB by GeneID:80720See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081503.12 ENSMUSP00000080219.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081503.12Link to Ensembl Protein Viewer:ENSMUSP00000080219.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081503Re-query CCDS DB by Protein ID:ENSMUSP00000080219
Original member Current member NCBI NM_001024954.2 NP_001020125.1 Accepted alive Link to Nucleotide Sequence:NM_001024954.2Link to Protein Sequence:NP_001020125.1Re-query CCDS DB by Nucleotide ID:NM_001024954Re-query CCDS DB by Protein ID:NP_001020125Link to BLAST:NP_001020125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020125.1 378 Q99NE9-1 378 100% 0 0

Chromosomal Locations for CCDS 22352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69832709 69832851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69859080 69859153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69864312 69864550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69864824 69865014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69866468 69866603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69870029 69870182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69870578 69870684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69871995 69872087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGCCGCCCCTCTGCGTCCCGTGCCGCCACAGCCCGCCCCGCGCCGCCTGCCGACCACAGCTCCACTAG
GCCATGACACGAGCGACGTCCTGCAGCAGATCATGGCCATCACCGACCAGAGCCTGGACGAGGCTCAGGC
CAGAAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGG
AAGACTGCCGTGAGCATCCAGTTTCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACA
TGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGAGAGGCCGAGGAGCAGCAGCAGGCAGCACAGCAAC
ACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGA
CAGATTTACCACTCTGAGCTAGAGAAGTATGAACAGGCCTGTCGTGAGTTCACCACACATGTCACCAACC
TTCTCCGGGAACAGAGTAGGGTGAGGCCTGTGTCTTGCAGGGAGATGGAACACATGGTGAACACCATCCA
GAGCAAGTTCAGTGCCATCCAGAGGCAGCTGAAGCAGAGCACGTGTGAGGCTGTGATGACTCTACGCTCA
CGGTTCCTGGATGCCAGGCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATT
TCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCAT
CACAGTGTCCCAGGTCTCTAACTGGTTTGGCAACAAAAGAATCCGGTACAAAAAGAATACAGGGAAGTTT
CAGGAAGAAGCCACCATGTACACAGGGAAAGCATCCACAGTCACCAAGGCCCGGCGTCCCAGGGGTCAGA
GCAGCTGCCAGTCCACACCCAGCCCAGGTCCCTGTGGCCCCTTGCCACTGACCAATGGAAGTGACGTGGT
TCTCACTCTGCGGACCCTGGCCTTCCTCCAGCCCCCCACTGGGGGAGTCTGCCTACAGCCCCTGGTCCAT
AGTAACTGGCAGAGGGCCGCCCCACAGCCAGCCTCATCACCTGCGGGAGAGTCTGGCAGCTTCAATTGGG
ATGCTGCATCTAATTAA

Translation (378 aa):
MAAPLRPVPPQPAPRRLPTTAPLGHDTSDVLQQIMAITDQSLDEAQARKHALNCHRMKSALFSVLCEIKG
KTAVSIQFQEEDPPDAQLLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNSIEHSDYRAKLSQIR
QIYHSELEKYEQACREFTTHVTNLLREQSRVRPVSCREMEHMVNTIQSKFSAIQRQLKQSTCEAVMTLRS
RFLDARRKRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRYKKNTGKF
QEEATMYTGKASTVTKARRPRGQSSCQSTPSPGPCGPLPLTNGSDVVLTLRTLAFLQPPTGGVCLQPLVH
SNWQRAAPQPASSPAGESGSFNWDAASN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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