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Report for CCDS27952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27952.1 Public Mus musculus 16 Socs1 23 108 98 CCDS HistoryNCBI Gene:12703Re-query CCDS DB by CCDS ID:27952.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038099.5 ENSMUSP00000038121.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038099.5Link to Ensembl Protein Viewer:ENSMUSP00000038121.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038099Re-query CCDS DB by Protein ID:ENSMUSP00000038121
Original member Current member EBI ENSMUST00000229866.1 ENSMUSP00000155530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229866.1Link to Ensembl Protein Viewer:ENSMUSP00000155530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229866Re-query CCDS DB by Protein ID:ENSMUSP00000155530
Original member Current member NCBI NM_001271603.1 NP_001258532.1 Accepted alive Link to Nucleotide Sequence:NM_001271603.1Link to Protein Sequence:NP_001258532.1Re-query CCDS DB by Nucleotide ID:NM_001271603Re-query CCDS DB by Protein ID:NP_001258532Link to BLAST:NP_001258532.1
Original member Current member NCBI NM_009896.2 NP_034026.1 Accepted alive Link to Nucleotide Sequence:NM_009896.2Link to Protein Sequence:NP_034026.1Re-query CCDS DB by Nucleotide ID:NM_009896Re-query CCDS DB by Protein ID:NP_034026Link to BLAST:NP_034026.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258532.1 212 O35716 212 100% 0 0
NP_034026.1 212 O35716 212 100% 0 0

Chromosomal Locations for CCDS 27952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10784233 10784871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGTAGCACGCAACCAGGTGGCAGCCGACAATGCGATCTCCCCGGCAGCAGAGCCCCGACGGCGGTCAG
AGCCCTCCTCGTCCTCGTCTTCGTCCTCGCCAGCGGCCCCCGTGCGTCCCCGGCCCTGCCCGGCGGTCCC
AGCCCCAGCCCCTGGCGACACTCACTTCCGCACCTTCCGCTCCCACTCCGATTACCGGCGCATCACGCGG
ACCAGCGCGCTCCTGGACGCCTGCGGCTTCTATTGGGGACCCCTGAGCGTGCACGGGGCGCACGAGCGGC
TGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAG
CGTGAAGATGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGC
AGCCGCGAGACCTTCGACTGCCTTTTCGAGCTGCTGGAGCACTACGTGGCGGCGCCGCGCCGCATGTTGG
GGGCCCCGCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGT
GGGTCGCGAGAACCTGGCGCGCATCCCTCTTAACCCGGTACTCCGTGACTACCTGAGTTCCTTCCCCTTC
CAGATCTGA

Translation (212 aa):
MVARNQVAADNAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAPAPGDTHFRTFRSHSDYRRITR
TSALLDACGFYWGPLSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMASGPTSIRVHFQAGRFHLDG
SRETFDCLFELLEHYVAAPRRMLGAPLRQRRVRPLQELCRQRIVAAVGRENLARIPLNPVLRDYLSSFPF
QI


Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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