NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1427.1 Public Homo sapiens 1 SYT2 24 110 108 CCDS HistoryNCBI Gene:127833Re-query CCDS DB by CCDS ID:1427.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1427.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367267.5 ENSP00000356236.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367267.5Link to Ensembl Protein Viewer:ENSP00000356236.1Re-query CCDS DB by Nucleotide ID:ENST00000367267Re-query CCDS DB by Protein ID:ENSP00000356236
Original member Current member EBI ENST00000367268.5 ENSP00000356237.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367268.5Link to Ensembl Protein Viewer:ENSP00000356237.4Re-query CCDS DB by Nucleotide ID:ENST00000367268Re-query CCDS DB by Protein ID:ENSP00000356237
Original member Current member NCBI NM_001136504.1 NP_001129976.1 Accepted alive Link to Nucleotide Sequence:NM_001136504.1Link to Protein Sequence:NP_001129976.1Re-query CCDS DB by Nucleotide ID:NM_001136504Re-query CCDS DB by Protein ID:NP_001129976Link to BLAST:NP_001129976.1
Original member Current member NCBI NM_177402.5 NP_796376.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177402.5Link to Protein Sequence:NP_796376.2Re-query CCDS DB by Nucleotide ID:NM_177402Re-query CCDS DB by Protein ID:NP_796376Link to BLAST:NP_796376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129976.1 419 Q8N9I0 419 100% 0 0
NP_796376.2 419 Q8N9I0 419 100% 0 0

Chromosomal Locations for CCDS 1427.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 202596757 202596963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202599218 202599351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202600357 202600474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202601890 202602057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202602378 202602545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202602999 202603118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202604455 202604621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202605595 202605772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAGGAACATTTTCAAGAGGAACCAGGAGCCTATTGTGGCTCCTGCCACCACCACCGCCACGATGCCCA
TTGGACCCGTGGACAACTCCACTGAGAGTGGGGGTGCTGGGGAGAGCCAGGAGGACATGTTTGCCAAACT
GAAGGAGAAGTTATTCAATGAGATAAACAAGATTCCCTTACCACCCTGGGCACTGATCGCCATTGCTGTG
GTTGCTGGGCTCCTGCTTCTCACCTGCTGCTTCTGCATCTGCAAGAAATGCTGCTGCAAGAAGAAGAAGA
ACAAGAAGGAGAAGGGCAAAGGCATGAAGAATGCCATGAACATGAAGGACATGAAAGGGGGTCAGGATGA
CGACGACGCAGAGACAGGCCTGACTGAGGGGGAAGGTGAAGGGGAGGAGGAGAAAGAGCCAGAGAACCTG
GGCAAACTGCAGTTTTCCCTGGACTATGATTTTCAGGCTAATCAGCTTACTGTGGGCGTTCTGCAGGCTG
CTGAACTGCCTGCCCTGGACATGGGAGGCACCTCAGACCCTTATGTCAAGGTCTTCCTCCTTCCTGACAA
GAAGAAGAAATATGAGACCAAAGTCCATCGGAAGACACTGAACCCTGCCTTCAATGAAACCTTCACCTTC
AAGGTGCCATACCAGGAGCTTGGGGGCAAAACTCTGGTGATGGCCATCTATGACTTTGACCGCTTCTCCA
AACATGACATCATTGGAGAGGTAAAGGTGCCTATGAACACAGTGGACCTCGGCCAGCCCATTGAGGAGTG
GAGAGACCTGCAAGGCGGGGAAAAGGAGGAGCCGGAGAAGCTGGGCGACATCTGCACCTCCCTGCGCTAT
GTGCCCACGGCCGGGAAGCTCACTGTCTGCATCCTGGAGGCTAAGAACCTCAAGAAGATGGACGTGGGCG
GCCTTTCAGACCCGTACGTGAAGATCCACCTGATGCAGAATGGCAAGAGGCTCAAGAAGAAGAAGACAAC
CGTGAAGAAGAAGACCCTGAACCCATACTTCAACGAGTCCTTCAGCTTTGAGATCCCCTTCGAGCAGATT
CAGAAAGTCCAGGTAGTGGTCACCGTGCTGGACTATGACAAGCTGGGCAAGAACGAAGCCATAGGCAAGA
TCTTCGTGGGCAGCAATGCCACGGGCACAGAGCTGCGGCACTGGTCCGACATGCTGGCCAACCCCCGGAG
GCCCATCGCCCAGTGGCACTCGCTCAAGCCTGAGGAGGAGGTGGATGCACTCCTGGGCAAGAACAAGTAG

Translation (419 aa):
MRNIFKRNQEPIVAPATTTATMPIGPVDNSTESGGAGESQEDMFAKLKEKLFNEINKIPLPPWALIAIAV
VAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEPENL
GKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNETFTF
KVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTSLRY
VPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQI
QKVQVVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH