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Report for CCDS86570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86570.1 Public Homo sapiens 17 RNF227 24 110 108 CCDS HistoryNCBI Gene:284023Re-query CCDS DB by CCDS ID:86570.1Re-query CCDS DB by GeneID:284023See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324348.9 ENSP00000490456.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324348.9Link to Ensembl Protein Viewer:ENSP00000490456.1Re-query CCDS DB by Nucleotide ID:ENST00000324348Re-query CCDS DB by Protein ID:ENSP00000490456
Original member Current member NCBI NM_001358699.2 NP_001345628.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001358699.2Link to Protein Sequence:NP_001345628.1Re-query CCDS DB by Nucleotide ID:NM_001358699Re-query CCDS DB by Protein ID:NP_001345628Link to BLAST:NP_001345628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345628.1 190 A6NIN4 190 100% 0 0

Chromosomal Locations for CCDS 86570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7915522 7915577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7915679 7916195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGCAGCTCTTGGTGAGGGTACCCTCTCTTCCGGAGCGGGGCGAGCTGGACTGCAACATCTGCTACCGTC
CTTTCAACCTCGGGTGCCGCGCGCCCCGCCGCCTGCCCGGAACGGCGCGCGCCCGCTGCGGCCACACGAT
CTGCACCGCCTGCCTCCGCGAGCTGGCGGCGCGCGGGGACGGCGGCGGGGCGGCCGCGCGCGTGGTGCGC
CTGCGCCGCGTGGTCACGTGCCCCTTCTGCCGCGCGCCCTCGCAGCTCCCTCGCGGCGGCCTCACGGAGA
TGGCTCTTGACTCGGACTTGTGGTCGCGATTGGAGGAAAAAGCGCGGGCCAAGTGCGAACGAGATGAGGC
TGGGAACCCGGCCAAGGAAAGCAGCGACGCTGACGGAGAGGCGGAGGAAGAAGGGGAGAGCGAGAAGGGG
GCGGGGCCTAGGAGTGCTGGGTGGCGCGCGCTCCGGCGGCTCTGGGACAGGGTCCTGGGGCCTGCGCGGC
GCTGGCGGCGTCCGCTGCCTAGCAACGTGCTCTACTGTGCGGAGATCAAGGACATTGGCCACCTGACCCG
TTGCACGTTGTAA

Translation (190 aa):
MQLLVRVPSLPERGELDCNICYRPFNLGCRAPRRLPGTARARCGHTICTACLRELAARGDGGGAAARVVR
LRRVVTCPFCRAPSQLPRGGLTEMALDSDLWSRLEEKARAKCERDEAGNPAKESSDADGEAEEEGESEKG
AGPRSAGWRALRRLWDRVLGPARRWRRPLPSNVLYCAEIKDIGHLTRCTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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