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Report for CCDS13505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13505.1 Public Homo sapiens 20 COL9A3 24 110 108 CCDS HistoryNCBI Gene:1299Re-query CCDS DB by CCDS ID:13505.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13505.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649368.1 ENSP00000496793.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649368.1Link to Ensembl Protein Viewer:ENSP00000496793.1Re-query CCDS DB by Nucleotide ID:ENST00000649368Re-query CCDS DB by Protein ID:ENSP00000496793
Original member Current member NCBI NM_001853.4 NP_001844.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001853.4Link to Protein Sequence:NP_001844.3Re-query CCDS DB by Nucleotide ID:NM_001853Re-query CCDS DB by Protein ID:NP_001844Link to BLAST:NP_001844.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001844.3 684 Q14050 684 100% 0 0

Chromosomal Locations for CCDS 13505.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62817065 62817142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62817567 62817635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62818518 62818553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62819222 62819293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62819929 62819982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62821181 62821216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62821507 62821530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62821757 62821810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62822111 62822164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62822591 62822632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62824445 62824501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62824968 62825021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62825817 62825870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62826204 62826257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62826767 62826820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62827241 62827294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62827923 62827976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62828764 62828817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62828923 62828976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62829455 62829499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62829628 62829681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62829766 62829819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62830360 62830413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62830517 62830588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62832154 62832189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62833020 62833064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62835921 62835953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62836187 62836333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62836478 62836532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62837083 62837265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62838684 62838761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62840542 62840732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGCCGGGCCGCGCGCGTGCGCCCCGCTCCTGCTCCTGCTCCTGCTCGGGGAGCTTCTGGCGGCCGCCG
GGGCGCAGAGAGTGGGACTCCCCGGCCCCCCCGGCCCCCCAGGGCCGCCCGGGAAGCCCGGCCAGGACGG
CATTGACGGAGAAGCTGGTCCTCCAGGTCTGCCTGGGCCCCCGGGACCAAAGGGGGCCCCAGGAAAGCCG
GGGAAACCAGGAGAGGCTGGGCTGCCGGGACTGCCGGGTGTGGATGGTCTGACTGGACGAGATGGACCCC
CTGGACCCAAGGGTGCCCCTGGGGAACGGGGAAGTCTGGGACCCCCGGGGCCGCCCGGGCTGGGGGGCAA
AGGCCTCCCTGGACCCCCCGGAGAGGCAGGAGTGAGCGGCCCCCCAGGTGGGATCGGCCTCCGCGGCCCC
CCGGGACCTTCTGGACTCCCCGGCCTCCCTGGTCCCCCAGGACCTCCCGGACCCCCTGGACACCCAGGAG
TCCTCCCTGAAGGCGCTACTGACCTTCAGTGCCCAAGTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGG
AATGCCAGGGTTCAAGGGACCCACTGGCTACAAAGGCGAGCAGGGGGAAGTCGGCAAGGACGGCGAGAAG
GGTGACCCTGGCCCCCCTGGGCCCGCCGGCCTCCCGGGCAGCGTGGGGCTGCAGGGCCCCCGGGGATTAC
GAGGACTGCCAGGGCCACTCGGGCCCCCTGGGGACCGGGGTCCCATTGGGTTCCGAGGGCCGCCTGGGAT
CCCAGGAGCGCCTGGGAAAGCGGGTGACCGAGGCGAGAGGGGCCCAGAAGGGTTCCGCGGCCCCAAGGGT
GACCTCGGCAGACCTGGTCCCAAGGGAACCCCCGGAGTGGCCGGGCCAAGCGGAGAGCCGGGCATGCCGG
GCAAGGACGGCCAGAATGGCGTGCCAGGACTCGATGGCCAGAAGGGAGAGGCTGGTCGCAACGGTGCTCC
GGGAGAGAAGGGCCCCAACGGGCTGCCGGGCCTCCCTGGACGAGCGGGGTCCAAAGGCGAGAAGGGAGAA
CGGGGCAGAGCTGGGGAGCTGGGTGAGGCCGGCCCCTCTGGAGAGCCAGGCGTCCCTGGAGATGCTGGCA
TGCCTGGGGAGCGCGGTGAGGCTGGCCACCGGGGCTCAGCGGGGGCCCTCGGCCCACAAGGCCCTCCCGG
AGCCCCTGGTGTCCGAGGCTTCCAGGGCCAGAAGGGCAGCATGGGAGACCCCGGCCTTCCAGGCCCCCAG
GGCCTCCGAGGTGACGTGGGCGACCGGGGTCCGGGAGGTGCCGCAGGCCCTAAGGGAGACCAGGGTATTG
CAGGTTCCGACGGTCTTCCTGGGGATAAAGGAGAACTGGGTCCCAGCGGCCTGGTCGGACCCAAAGGAGA
GTCTGGCAGTCGAGGGGAGCTGGGCCCCAAAGGCACCCAGGGTCCCAACGGCACCAGCGGTGTTCAGGGT
GTCCCCGGGCCCCCCGGTCCTCTGGGCCTGCAGGGCGTCCCGGGTGTTCCTGGCATCACGGGGAAGCCGG
GAGTTCCGGGGAAGGAGGCCAGCGAGCAGCGCATCAGGGAGCTGTGTGGGGGGATGATCAGCGAACAAAT
TGCACAGTTAGCCGCGCACCTAAGGAAGCCTTTGGCACCCGGGTCCATTGGTCGGCCCGGTCCAGCTGGC
CCCCCTGGGCCCCCAGGACCCCCAGGCTCCATTGGTCACCCTGGCGCTCGAGGACCCCCTGGATACCGCG
GTCCCACTGGGGAGCTGGGAGACCCCGGGCCCAGAGGAAACCAGGGTGACAGAGGAGACAAAGGCGCGGC
AGGAGCAGGGCTGGACGGGCCTGAAGGAGACCAGGGGCCCCAAGGACCCCAAGGCGTGCCCGGCACCAGC
AAGGACGGCCAGGACGGTGCTCCCGGCGAGCCTGGGCCTCCCGGAGATCCTGGGCTTCCAGGTGCCATTG
GGGCCCAGGGGACACCGGGGATCTGCGACACCTCAGCCTGCCAAGGAGCCGTGTTAGGAGGGGTCGGGGA
GAAATCAGGCTCTCGAAGCTCATAA

Translation (684 aa):
MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKP
GKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGP
PGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEK
GDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKG
DLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGE
RGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ
GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQG
VPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAG
PPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTS
KDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQGAVLGGVGEKSGSRSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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