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Report for CCDS4970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4970.1 Public Homo sapiens 6 COL19A1 24 110 108 CCDS HistoryNCBI Gene:1310Re-query CCDS DB by CCDS ID:4970.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620364.5 ENSP00000480474.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620364.5Link to Ensembl Protein Viewer:ENSP00000480474.1Re-query CCDS DB by Nucleotide ID:ENST00000620364Re-query CCDS DB by Protein ID:ENSP00000480474
Original member Current member NCBI NM_001858.6 NP_001849.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001858.6Link to Protein Sequence:NP_001849.2Re-query CCDS DB by Nucleotide ID:NM_001858Re-query CCDS DB by Protein ID:NP_001849Link to BLAST:NP_001849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001849.2 1142 Q14993 1142 100% 0 0

Chromosomal Locations for CCDS 4970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 69879568 69879658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69898948 69899022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69900239 69900338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69927909 69928032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69929425 69929700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69932783 69932863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69936785 69936910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69938038 69938100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69959996 69960040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69962826 69962870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70023627 70023680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70034245 70034298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70035904 70035939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70068423 70068476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70102169 70102222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70121880 70121942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70130182 70130223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70137685 70137747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70140954 70140989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70141893 70141928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70142023 70142076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70142767 70142820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70144210 70144263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70144918 70145007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70146659 70146703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70146812 70146889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70149704 70149739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70149851 70149904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70149992 70150045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70151397 70151438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70156127 70156231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70156316 70156369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70156670 70156723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70161900 70161953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70163343 70163396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70165941 70165985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70168025 70168075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70168171 70168215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70168655 70168681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70171964 70172017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70176520 70176564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70180312 70180356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70180461 70180523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70184703 70184738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70184871 70184915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70188075 70188245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70190315 70190381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70199608 70199736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70206901 70206978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70207147 70207274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGAGACTCACTGGCCCTTGGAAACTTTGGCTTTGGATGTCAATATTTCTGCTTCCTGCTTCCACTTCCG
TGACCGTTAGGGACAAGACAGAAGAGTCATGCCCTATCCTGAGAATAGAGGGACATCAGCTGACATATGA
CAACATAAACAAACTTGAAGTTTCAGGTTTTGATCTAGGAGACAGCTTTTCTCTAAGACGTGCATTTTGT
GAAAGTGATAAAACCTGTTTCAAATTGGGAAGTGCACTTCTTATTAGAGACACTATTAAGATATTTCCCA
AAGGCCTTCCTGAGGAGTACTCAGTAGCTGCCATGTTTCGAGTACGAAGAAACGCCAAAAAGGAACGGTG
GTTTCTGTGGCAGGTTTTAAACCAGCAGAATATTCCACAGATTTCTATAGTAGTTGATGGTGGAAAGAAG
GTGGTGGAATTTATGTTTCAAGCCACAGAGGGAGATGTGTTGAACTACATTTTTAGAAATCGAGAACTCC
GTCCTTTGTTTGATCGTCAGTGGCACAAACTTGGCATTAGTATACAATCCCAGGTCATTTCACTTTATAT
GGATTGTAATTTAATTGCGAGGAGGCAGACTGATGAAAAGGACACTGTGGATTTCCATGGACGGACAGTT
ATTGCTACGCGAGCTTCAGATGGCAAGCCTGTGGATATTGAACTTCACCAACTTAAAATCTACTGCAGTG
CAAACCTCATAGCTCAAGAAACATGTTGTGAAATATCAGATACTAAGTGCCCAGAGCAGGATGGCTTTGG
AAATATTGCATCATCATGGGTAACTGCTCATGCCAGTAAAATGTCTTCATATCTGCCAGCAAAGCAGGAA
CTTAAAGACCAGTGCCAGTGCATTCCAAACAAGGGAGAAGCAGGATTACCAGGAGCTCCGGGTTCACCTG
GGCAGAAAGGGCATAAAGGAGAGCCGGGTGAAAATGGTTTACATGGTGCTCCAGGATTCCCTGGTCAAAA
GGGAGAGCAAGGTTTTGAAGGCAGCAAAGGAGAAACTGGTGAAAAGGGTGAACAAGGAGAAAAAGGAGAT
CCAGCTCTGGCTGGCCTTAATGGAGAAAATGGTTTGAAAGGTGACTTGGGTCCTCATGGTCCACCTGGCC
CAAAAGGAGAAAAGGGAGATACAGGACCCCCAGGACCACCAGCCTTACCTGGTTCCCTGGGGATACAAGG
CCCCCAAGGTCCACCTGGAAAAGAGGGTCAGAGGGGAAGACGAGGGAAAACAGGACCTCCCGGAAAACCA
GGACCCCCAGGACCACCTGGACCTCCTGGAATACAAGGAATACACCAAACTCTTGGTGGATATTATAACA
AGGATAACAAGGGAAATGATGAACATGAAGCTGGAGGCCTGAAAGGAGACAAGGGTGAAACTGGACTACC
AGGATTTCCAGGGTCTGTTGGCCCTAAAGGACAAAAAGGAGAACCTGGAGAGCCTTTTACAAAAGGAGAA
AAAGGAGATAGAGGAGAACCTGGGGTAATAGGATCACAGGGAGTAAAGGGTGAACCTGGAGATCCCGGAC
CCCCTGGTTTAATAGGAAGCCCAGGACTAAAGGGTCAGCAAGGATCTGCAGGCTCCATGGGACCCAGAGG
ACCGCCAGGAGATGTTGGATTGCCAGGAGAACATGGTATCCCAGGAAAACAAGGCATTAAAGGAGAAAAG
GGAGATCCGGGTGGGATCATAGGCCCTCCCGGGCTTCCAGGTCCAAAAGGTGAGGCTGGTCCTCCAGGGA
AAAGCCTGCCAGGGGAACCAGGATTAGATGGAAATCCTGGAGCACCTGGTCCACGTGGGCCAAAGGGTGA
AAGAGGACTTCCAGGTGTTCACGGTTCCCCAGGGGACATAGGCCCACAAGGGATAGGAATTCCTGGCAGA
ACAGGCGCCCAAGGACCAGCTGGAGAGCCAGGTATTCAGGGTCCTCGAGGTCTCCCTGGGTTGCCAGGAA
CTCCAGGGACTCCAGGGAATGATGGAGTTCCAGGGAGAGATGGAAAGCCAGGCCTGCCAGGCCCCCCAGG
TGACCCGATTGCACTTCCTCTCTTGGGAGACATCGGTGCTTTGCTCAAGAATTTCTGTGGCAACTGCCAA
GCCAGTGTCCCAGGGCTGAAAAGCAACAAAGGAGAAGAAGGAGGTGCTGGTGAGCCTGGAAAGTATGATT
CCATGGCCCGGAAGGGTGATATAGGGCCACGGGGTCCTCCAGGAATCCCAGGAAGAGAGGGACCAAAGGG
AAGCAAAGGAGAGCGGGGCTACCCTGGGATACCTGGGGAGAAAGGCGATGAGGGTCTTCAAGGAATTCCA
GGCATTCCAGGTGCTCCAGGCCCGACTGGACCCCCTGGCTTAATGGGAAGAACTGGACATCCTGGTCCCA
CAGGAGCAAAAGGTGAAAAGGGCAGCGACGGACCCCCTGGGAAACCCGGACCACCTGGACCACCTGGTAT
TCCATTTAATGAACGAAACGGCATGAGCAGTTTATATAAAATTAAGGGAGGTGTGAATGTTCCCAGTTAC
CCAGGGCCACCCGGTCCTCCTGGCCCAAAAGGCGATCCTGGCCCAGTGGGAGAGCCTGGTGCAATGGGGT
TGCCAGGATTAGAAGGATTTCCAGGTGTAAAGGGAGATCGAGGCCCAGCAGGTCCCCCAGGAATAGCAGG
GATGTCGGGAAAACCTGGTGCCCCAGGGCCTCCAGGAGTTCCAGGGGAACCGGGTGAGAGAGGACCTGTT
GGAGATATAGGTTTCCCTGGACCAGAAGGACCCTCAGGAAAGCCAGGAATAAATGGAAAAGATGGAATAC
CAGGTGCTCAGGGCATCATGGGTAAGCCTGGAGACAGAGGCCCCAAAGGAGAACGTGGTGATCAGGGGAT
TCCAGGAGACAGAGGCTCACAAGGTGAACGGGGAAAACCAGGCCTTACAGGCATGAAGGGGGCCATCGGT
CCTATGGGTCCACCAGGAAACAAGGGCTCCATGGGATCCCCTGGCCACCAAGGCCCTCCAGGCTCTCCAG
GCATCCCTGGCATTCCGGCTGATGCAGTTTCATTTGAAGAAATAAAGAAGTATATTAATCAAGAGGTCCT
AAGGATTTTTGAAGAGAGGATGGCTGTATTCCTATCCCAGCTCAAGCTGCCAGCAGCAATGTTGGCTGCC
CAAGCTTATGGGAGACCTGGGCCACCAGGGAAGGATGGGTTGCCTGGGCCACCAGGAGACCCTGGACCCC
AAGGCTACAGAGGACAGAAGGGAGAAAGAGGTGAACCTGGAATTGGGCTGCCAGGGAGTCCAGGTCTTCC
TGGGACTTCAGCTCTGGGTTTGCCAGGCTCACCAGGTGCCCCAGGCCCACAGGGCCCCCCAGGACCCAGT
GGAAGATGTAACCCAGAAGATTGCCTCTATCCTGTGTCTCATGCCCATCAGCGCACAGGTGGGAATTGA

Translation (1142 aa):
MRLTGPWKLWLWMSIFLLPASTSVTVRDKTEESCPILRIEGHQLTYDNINKLEVSGFDLGDSFSLRRAFC
ESDKTCFKLGSALLIRDTIKIFPKGLPEEYSVAAMFRVRRNAKKERWFLWQVLNQQNIPQISIVVDGGKK
VVEFMFQATEGDVLNYIFRNRELRPLFDRQWHKLGISIQSQVISLYMDCNLIARRQTDEKDTVDFHGRTV
IATRASDGKPVDIELHQLKIYCSANLIAQETCCEISDTKCPEQDGFGNIASSWVTAHASKMSSYLPAKQE
LKDQCQCIPNKGEAGLPGAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEGSKGETGEKGEQGEKGD
PALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQGPPGKEGQRGRRGKTGPPGKP
GPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGE
KGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEK
GDPGGIIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGR
TGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQ
ASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIPGREGPKGSKGERGYPGIPGEKGDEGLQGIP
GIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSY
PGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPV
GDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIG
PMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKKYINQEVLRIFEERMAVFLSQLKLPAAMLAA
QAYGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGTSALGLPGSPGAPGPQGPPGPS
GRCNPEDCLYPVSHAHQRTGGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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