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Report for CCDS7993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7993.1 Public Homo sapiens 11 CCDC86 24 110 108 CCDS HistoryNCBI Gene:79080Re-query CCDS DB by CCDS ID:7993.1Re-query CCDS DB by GeneID:79080See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227520.10 ENSP00000227520.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227520.10Link to Ensembl Protein Viewer:ENSP00000227520.5Re-query CCDS DB by Nucleotide ID:ENST00000227520Re-query CCDS DB by Protein ID:ENSP00000227520
Original member Current member NCBI NM_024098.4 NP_077003.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024098.4Link to Protein Sequence:NP_077003.1Re-query CCDS DB by Nucleotide ID:NM_024098Re-query CCDS DB by Protein ID:NP_077003Link to BLAST:NP_077003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077003.1 360 Q9H6F5-1 360 100% 0 0

Chromosomal Locations for CCDS 7993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60842125 60842882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60847924 60848053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60849940 60850014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60850206 60850325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGATACACCGTTAAGGCGCAGCCGACGGCTGGGAGGCCTAAGGCCCGAATCCCCCGAGAGCCTCACCT
CAGTTTCGCGGACGAGACGGGCCCTTGTGGAGTTCGAGTCGAACCCAGAAGAAACGAGGGAGCCCGGGTC
TCCTCCGAGTGTGCAGCGGGCTGGCCTGGGGTCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGATCACCC
CGTCTGCAGCAGGGTGCAGGCTTGGAGTCACCCCAAGGGCAGCCAGAGCCAGGCGCAGCGTCCCCCCAGC
GTCAGCAAGACCTACACCTGGAGTCGCCTCAAAGACAGCCAGAGTACAGTCCTGAATCCCCACGATGTCA
GCCGAAGCCAAGTGAGGAGGCACCAAAGTGTTCTCAGGACCAGGGAGTACTGGCCTCGGAGTTGGCCCAG
AATAAGGAGGAGCTGACCCCGGGGGCCCCCCAGCATCAGCTACCGCCGGTCCCAGGATCACCAGAGCCTT
ACCCCGGTCAGCAAGCTCCCGGTCCGGAGCCCTCTCAGCCACTACTGGAGCTGACACCCAGGGCACCTGG
CTCCCCCCGGGGTCAGCATGAGCCGAGCAAGCCACCTCCAGCTGGGGAGACGGTGACAGGCGGCTTCGGG
GCAAAGAAGCGAAAAGGTTCTTCATCCCAGGCCCCAGCGTCCAAGAAGTTGAATAAAGAGGAGCTTCCTG
TAATCCCGAAGGGGAAGCCCAAATCGGGGCGAGTGTGGAAGGACCGCTCCAAGAAAAGATTCTCCCAGAT
GCTTCAGGACAAGCCCCTGCGCACATCGTGGCAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCC
AAGGACTTTGCCCGTCACCTGGAGGAGGAGAAGGAGAGGCGCCGCCAGGAGAAGAAACAGCGCCGGGCTG
AGAACCTGAAACGCCGCCTGGAGAATGAGCGGAAGGCAGAGGTCGTCCAAGTGATCCGAAACCCCGCCAA
GCTCAAGCGGGCAAAGAAGAAGCAGCTGCGCTCCATTGAGAAGCGGGACACCCTGGCCCTGCTGCAGAAG
CAGCCGCCCCAGCAGCCGGCAGCCAAGATCTGA

Translation (360 aa):
MDTPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAGLGSPERPPKTSPGSP
RLQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQ
NKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSKPPPAGETVTGGFG
AKKRKGSSSQAPASKKLNKEELPVIPKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLA
KDFARHLEEEKERRRQEKKQRRAENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQK
QPPQQPAAKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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