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Report for CCDS35394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35394.1 Public Homo sapiens X OCRL 24 110 108 CCDS HistoryNCBI Gene:4952Re-query CCDS DB by CCDS ID:35394.1Re-query CCDS DB by GeneID:4952See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357121.5 ENSP00000349635.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357121.5Link to Ensembl Protein Viewer:ENSP00000349635.5Re-query CCDS DB by Nucleotide ID:ENST00000357121Re-query CCDS DB by Protein ID:ENSP00000349635
Original member Current member NCBI NM_001587.4 NP_001578.2 Accepted alive Link to Nucleotide Sequence:NM_001587.4Link to Protein Sequence:NP_001578.2Re-query CCDS DB by Nucleotide ID:NM_001587Re-query CCDS DB by Protein ID:NP_001578Link to BLAST:NP_001578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001578.2 893 Q01968-2 893 100% 0 0

Chromosomal Locations for CCDS 35394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 129540440 129540478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129540744 129540823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129544958 129545037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129548563 129548601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129557325 129557435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129557861 129557950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129558633 129558753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129558840 129559001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129560550 129560651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129561179 129561293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129562384 129562500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129562599 129562786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129565772 129565883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129567254 129567363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129569264 129569399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129575140 129575250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129575897 129576062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129576317 129576552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129587002 129587118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129588179 129588263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129588886 129589013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129589845 129589956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129590146 129590270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGGAGCCGCCGCTCCCGGTCGGAGCCCAGCCGCTTGCCACTGTCGAGGGTATGGAGATGAAGGGTCCTC
TCCGGGAGCCCTGCGCCCTGACCCTAGCCCAGAGGAACGGGCAATATGAGTTAATAATCCAGTTGCATGA
GAAGGAACAGCATGTTCAAGATATCATTCCTATAAATAGCCACTTCAGATGTGTTCAAGAAGCAGAAGAA
ACTCTTTTGATTGACATAGCTTCTAACAGTGGCTGCAAAATTCGGGTTCAGGGGGACTGGATCAGAGAGC
GCCGCTTTGAAATCCCTGATGAGGAACACTGTTTGAAGTTCCTCTCAGCTGTCCTTGCTGCTCAGAAAGC
TCAGTCACAGCTTCTTGTTCCAGAGCAAAAGGACTCATCTAGCTGGTACCAGAAATTAGACACTAAGGAC
AAACCTTCTGTTTTTTCAGGGCTTCTTGGATTTGAAGACAATTTTTCTTCTATGAATTTGGACAAGAAAA
TAAATTCACAAAATCAGCCTACTGGGATTCATCGGGAACCCCCACCTCCACCCTTTTCAGTGAATAAAAT
GCTTCCACGTGAAAAAGAAGCTTCTAACAAGGAGCAGCCCAAAGTGACCAACACCATGCGGAAGCTCTTT
GTACCAAATACCCAATCTGGGCAGCGGGAGGGTCTCATCAAACATATCCTGGCAAAGCGAGAGAAAGAAT
ATGTCAACATTCAGACTTTCAGATTTTTTGTTGGAACTTGGAATGTGAATGGCCAGTCTCCAGATAGCGG
GTTAGAACCTTGGCTGAACTGTGATCCCAATCCTCCTGATATCTACTGCATTGGATTCCAAGAACTGGAC
TTGAGCACAGAAGCCTTCTTCTACTTTGAATCTGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAG
GTTTGCATTCCAAAGCCAAGTATAAGAAAGTTCAACTGGTGCGCCTTGTTGGGATGATGCTTCTTATATT
TGCCAGAAAGGATCAGTGTCGATACATTCGTGATATTGCTACAGAAACAGTTGGAACTGGAATCATGGGG
AAAATGGGAAACAAAGGTGGGGTAGCTGTGAGATTTGTATTTCACAACACCACCTTTTGCATTGTCAATT
CCCATCTGGCTGCACACGTGGAGGACTTTGAGAGAAGGAATCAAGATTATAAGGACATTTGTGCGAGAAT
GAGTTTTGTGGTCCCAAATCAGACCCTCCCGCAGTTGAACATCATGAAACATGAGGTTGTCATTTGGTTG
GGAGATTTGAATTATAGACTTTGCATGCCTGATGCCAATGAGGTGAAAAGTCTTATTAATAAGAAAGACC
TTCAGAGACTCTTGAAATTCGACCAGCTAAATATTCAGCGCACACAGAAAAAAGCTTTTGTTGACTTCAA
TGAAGGGGAAATCAAGTTCATCCCCACTTATAAGTATGACTCTAAAACAGACCGGTGGGATTCCAGTGGG
AAATGCCGGGTTCCAGCCTGGTGTGACCGAATTCTTTGGAGAGGAACAAATGTTAATCAGCTTAATTATC
GGAGTCACATGGAACTGAAAACCAGCGACCACAAGCCTGTTAGCGCCCTCTTCCATATTGGGGTGAAGGT
TGTGGATGAACGAAGGTACCGGAAAGTCTTTGAAGATAGTGTACGCATCATGGACAGAATGGAAAATGAC
TTCCTTCCTTCCTTAGAACTCAGCAGGAGGGAGTTTGTGTTTGAAAATGTGAAGTTTCGGCAACTACAAA
AGGAGAAGTTCCAGATCAGCAACAATGGACAGGTTCCCTGCCATTTTTCTTTCATCCCTAAACTTAATGA
CAGCCAGTACTGCAAGCCATGGCTTCGGGCTGAACCTTTTGAGGGCTACTTGGAGCCAAATGAGACAGTG
GACATTTCTCTTGATGTGTATGTCAGCAAAGACTCTGTAACCATCCTGAACTCGGGAGAAGATAAGATTG
AAGATATTCTCGTCCTTCACCTGGATCGAGGCAAAGATTACTTCTTGACTATCAGTGGAAATTACCTCCC
AAGTTGTTTTGGCACATCCTTAGAGGCTCTGTGCCGTATGAAAAGACCAATCCGAGAAGTTCCTGTTACC
AAACTCATAGACTTGGAGAAATCCCTTCTGCAAATGGTTCCTTTGGATGAAGGTGCCAGTGAGAGACCCC
TTCAGGTTCCCAAGGAGATCTGGCTTCTAGTAGATCACCTATTCAAATACGCCTGTCACCAGGAGGACCT
GTTCCAGACCCCTGGAATGCAGGAAGAGCTCCAGCAGATCATTGATTGTCTGGATACCAGCATTCCTGAG
ACAATCCCTGGCAGCAACCACTCTGTGGCTGAAGCACTGCTCATTTTCTTGGAAGCCCTGCCAGAGCCAG
TCATCTGTTACGAGCTGTATCAGCGATGTCTTGACTCTGCTTATGATCCCCGGATCTGCCGACAGGTGAT
CTCCCAGCTTCCGAGATGCCATAGAAATGTTTTCCGTTACTTGATGGCATTCCTTCGAGAACTCTTAAAA
TTCTCTGAATACAATAGCGTCAATGCCAACATGATCGCTACTCTCTTCACTAGTCTTCTCCTGAGGCCTC
CACCCAACCTTATGGCAAGACAGACTCCAAGTGACCGCCAGCGTGCTATTCAGTTCCTTCTGGGCTTTCT
GCTTGGGAGCGAAGAAGACTAA

Translation (893 aa):
MEPPLPVGAQPLATVEGMEMKGPLREPCALTLAQRNGQYELIIQLHEKEQHVQDIIPINSHFRCVQEAEE
TLLIDIASNSGCKIRVQGDWIRERRFEIPDEEHCLKFLSAVLAAQKAQSQLLVPEQKDSSSWYQKLDTKD
KPSVFSGLLGFEDNFSSMNLDKKINSQNQPTGIHREPPPPPFSVNKMLPREKEASNKEQPKVTNTMRKLF
VPNTQSGQREGLIKHILAKREKEYVNIQTFRFFVGTWNVNGQSPDSGLEPWLNCDPNPPDIYCIGFQELD
LSTEAFFYFESVKEQEWSMAVERGLHSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMG
KMGNKGGVAVRFVFHNTTFCIVNSHLAAHVEDFERRNQDYKDICARMSFVVPNQTLPQLNIMKHEVVIWL
GDLNYRLCMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYDSKTDRWDSSG
KCRVPAWCDRILWRGTNVNQLNYRSHMELKTSDHKPVSALFHIGVKVVDERRYRKVFEDSVRIMDRMEND
FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETV
DISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVT
KLIDLEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPE
TIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLK
FSEYNSVNANMIATLFTSLLLRPPPNLMARQTPSDRQRAIQFLLGFLLGSEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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