NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13976.1 Public Homo sapiens 22 JOSD1 24 110 108 CCDS HistoryNCBI Gene:9929Re-query CCDS DB by CCDS ID:13976.1Re-query CCDS DB by GeneID:9929See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216039.9 ENSP00000216039.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000216039.9Link to Ensembl Protein Viewer:ENSP00000216039.5Re-query CCDS DB by Nucleotide ID:ENST00000216039Re-query CCDS DB by Protein ID:ENSP00000216039
Original member Current member EBI ENST00000683374.1 ENSP00000506752.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683374.1Link to Ensembl Protein Viewer:ENSP00000506752.1Re-query CCDS DB by Nucleotide ID:ENST00000683374Re-query CCDS DB by Protein ID:ENSP00000506752
Original member Current member NCBI NM_001360235.2 NP_001347164.1 Accepted alive Link to Nucleotide Sequence:NM_001360235.2Link to Protein Sequence:NP_001347164.1Re-query CCDS DB by Nucleotide ID:NM_001360235Re-query CCDS DB by Protein ID:NP_001347164Link to BLAST:NP_001347164.1
Original member Current member NCBI NM_001360236.2 NP_001347165.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001360236.2Link to Protein Sequence:NP_001347165.1Re-query CCDS DB by Nucleotide ID:NM_001360236Re-query CCDS DB by Protein ID:NP_001347165Link to BLAST:NP_001347165.1
Original member Current member NCBI NM_014876.7 NP_055691.1 Accepted alive Link to Nucleotide Sequence:NM_014876.7Link to Protein Sequence:NP_055691.1Re-query CCDS DB by Nucleotide ID:NM_014876Re-query CCDS DB by Protein ID:NP_055691Link to BLAST:NP_055691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347164.1 202 Q15040 202 100% 0 0
NP_001347165.1 202 Q15040 202 100% 0 0
NP_055691.1 202 Q15040 202 100% 0 0

Chromosomal Locations for CCDS 13976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38687902 38688001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38688935 38689129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38689296 38689424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38699803 38699987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGAGTTGTGTGCCATGGAAAGGAGACAAGGCCAAATCTGAATCATTGGAGCTGCCCCAGGCAGCACCCC
CACAAATCTACCATGAGAAACAGCGCAGGGAGCTTTGTGCCCTCCACGCCCTCAATAACGTCTTCCAGGA
CAGCAATGCCTTCACCCGGGATACGCTGCAAGAGATTTTCCAGAGGTTGTCTCCAAACACCATGGTGACA
CCTCACAAGAAGAGCATGCTGGGAAATGGCAACTACGATGTGAATGTCATTATGGCAGCACTTCAGACCA
AAGGCTATGAAGCTGTTTGGTGGGACAAGCGCAGGGATGTCGGTGTCATTGCCCTCACTAACGTCATGGG
CTTCATCATGAATCTGCCCTCCAGCCTATGCTGGGGTCCACTGAAACTGCCCCTCAAAAGGCAGCACTGG
ATCTGTGTTCGAGAGGTGGGAGGGGCCTACTACAACCTCGACTCCAAACTCAAGATGCCCGAGTGGATTG
GAGGCGAGAGCGAGCTCAGGAAGTTTCTAAAACATCATTTGCGAGGAAAGAACTGTGAACTCCTGCTGGT
GGTACCAGAAGAGGTAGAGGCTCATCAGAGTTGGAGGACCGATGTGTAA

Translation (202 aa):
MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVT
PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW
ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSWRTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH