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Report for CCDS6267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6267.1 Public Homo sapiens 8 PLEKHF2 24 110 108 CCDS HistoryNCBI Gene:79666Re-query CCDS DB by CCDS ID:6267.1Re-query CCDS DB by GeneID:79666See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315367.4 ENSP00000322373.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315367.4Link to Ensembl Protein Viewer:ENSP00000322373.3Re-query CCDS DB by Nucleotide ID:ENST00000315367Re-query CCDS DB by Protein ID:ENSP00000322373
Original member Current member EBI ENST00000519516.1 ENSP00000427792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519516.1Link to Ensembl Protein Viewer:ENSP00000427792.1Re-query CCDS DB by Nucleotide ID:ENST00000519516Re-query CCDS DB by Protein ID:ENSP00000427792
Original member Current member EBI ENST00000700745.1 ENSP00000515158.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700745.1Link to Ensembl Protein Viewer:ENSP00000515158.1Re-query CCDS DB by Nucleotide ID:ENST00000700745Re-query CCDS DB by Protein ID:ENSP00000515158
Original member Current member EBI ENST00000700746.1 ENSP00000515159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700746.1Link to Ensembl Protein Viewer:ENSP00000515159.1Re-query CCDS DB by Nucleotide ID:ENST00000700746Re-query CCDS DB by Protein ID:ENSP00000515159
Original member Current member EBI ENST00000700748.1 ENSP00000515160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700748.1Link to Ensembl Protein Viewer:ENSP00000515160.1Re-query CCDS DB by Nucleotide ID:ENST00000700748Re-query CCDS DB by Protein ID:ENSP00000515160
Original member Current member EBI ENST00000700749.1 ENSP00000515161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700749.1Link to Ensembl Protein Viewer:ENSP00000515161.1Re-query CCDS DB by Nucleotide ID:ENST00000700749Re-query CCDS DB by Protein ID:ENSP00000515161
Original member Current member NCBI NM_024613.4 NP_078889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024613.4Link to Protein Sequence:NP_078889.1Re-query CCDS DB by Nucleotide ID:NM_024613Re-query CCDS DB by Protein ID:NP_078889Link to BLAST:NP_078889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078889.1 249 Q9H8W4 249 100% 0 0

Chromosomal Locations for CCDS 6267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95154045 95154794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAG
CAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAG
GAAAAAGCCCAAAGCAAGGCAGTTTTTCTTGTTTAATGATATTCTTGTATATGGCAATATTGTCATCCAG
AAGAAAAAATATAACAAACAACATATTATTCCCCTGGAAAATGTCACTATTGATTCCATCAAAGATGAGG
GAGACTTAAGGAATGGATGGCTAATCAAGACACCAACTAAATCTTTTGCAGTTTATGCTGCCACTGCTAC
GGAGAAATCAGAATGGATGAATCATATAAATAAATGTGTTACTGATTTACTCTCCAAAAGTGGGAAGACA
CCCAGTAATGAACATGCTGCTGTCTGGGTTCCTGACTCTGAGGCAACTGTATGTATGCGTTGTCAGAAAG
CAAAATTCACACCTGTTAATCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTGTCTGTGGGCCCTGCTC
TGAAAAGAGATTTCTTCTTCCCAGCCAGTCCTCTAAGCCTGTGCGGATTTGTGACTTCTGCTATGACCTG
CTTTCTGCTGGGGACATGGCCACATGCCAGCCTGCTAGATCAGACTCTTACAGCCAGTCATTGAAGTCTC
CTTTAAATGATATGTCTGATGATGATGACGATGATGATAGCAGTGACTAA

Translation (249 aa):
MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFNDILVYGNIVIQ
KKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKT
PSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDL
LSAGDMATCQPARSDSYSQSLKSPLNDMSDDDDDDDSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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