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Report for CCDS30334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30334.1 Public Mus musculus X Pbdc1 23 108 98 CCDS HistoryNCBI Gene:67683Re-query CCDS DB by CCDS ID:30334.1Re-query CCDS DB by GeneID:67683See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033577.10 ENSMUSP00000033577.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033577.10Link to Ensembl Protein Viewer:ENSMUSP00000033577.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033577Re-query CCDS DB by Protein ID:ENSMUSP00000033577
Original member Current member NCBI NM_026312.5 NP_080588.1 Accepted alive Link to Nucleotide Sequence:NM_026312.5Link to Protein Sequence:NP_080588.1Re-query CCDS DB by Nucleotide ID:NM_026312Re-query CCDS DB by Protein ID:NP_080588Link to BLAST:NP_080588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080588.1 198 Q9D0B6-1 198 100% 0 0

Chromosomal Locations for CCDS 30334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 105079814 105079843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105079954 105080019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105081371 105081430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105081938 105082078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105082694 105082805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105083016 105083203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGATGCTGCCGGCGAAAGCGAAGAGCCGGTCTCTGGGGAAGCGTTGTCCATCGCCCATGCGCTCTCTC
ACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGCATGC
TGAAGTCTATTATAAACTGATTTCATCAGTTGACCCACAGTTTCTGAAACTCACCAAAGTAGATGACCAA
ATCTACTCTGAGTTCCGTGAGATTTTTGAGACACTCAGGGTAGATGTATTGGACCCAGAAGAACTCAAAT
CAGAATCAGCTAAAGAAAAGTGGAGACCATTCTGCTTAAAATTTGAAGGGATCGTAGAAGATTATAACTA
CGGGACTTTACTGCGACTGGATTGTTCCCAGGGCTACACTGAAGAGAACACCATCTTTGCACCCAGGATT
CAATTTTTTGCCATTGAAATTGCTCGGAACCGGGAAGGCTATAATAAAGCAGTTTCCGTCAGTATTCAGG
ACAAAGAAGGAGAGGAAGGAGCTGGCAATAAAGAAGAAGCAGCTGAGAAAGGAGCTGATAGTGGAGGAGA
AAAAGAGGAAGGAGCCAACAGAGAAGGAGAAAAGTAG

Translation (198 aa):
MDAAGESEEPVSGEALSIAHALSHPPESYGNDPDIEMAWAIRAMQHAEVYYKLISSVDPQFLKLTKVDDQ
IYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFAPRI
QFFAIEIARNREGYNKAVSVSIQDKEGEEGAGNKEEAAEKGADSGGEKEEGANREGEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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