NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20419.1 Public Mus musculus 6 Jagn1 23 108 98 CCDS HistoryNCBI Gene:67767Re-query CCDS DB by CCDS ID:20419.1Re-query CCDS DB by GeneID:67767See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101070.4 ENSMUSP00000098631.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101070.4Link to Ensembl Protein Viewer:ENSMUSP00000098631.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101070Re-query CCDS DB by Protein ID:ENSMUSP00000098631
Original member Current member NCBI NM_026365.3 NP_080641.1 Accepted alive Link to Nucleotide Sequence:NM_026365.3Link to Protein Sequence:NP_080641.1Re-query CCDS DB by Nucleotide ID:NM_026365Re-query CCDS DB by Protein ID:NP_080641Link to BLAST:NP_080641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080641.1 183 Q5XKN4 183 100% 0 0

Chromosomal Locations for CCDS 20419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113442709 113442797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113447258 113447720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCGTCTCGGGCAGGCCCGCGAGCGGCCGGCACCGACGGCAGCGACTTTCAGCACCGGGAGCGCGTCG
CCATGCACTACCAGATGAGTGTGACCCTCAAGTACGAAATCAAGAAGCTGATCTACGTGCATCTCGTCAT
ATGGCTGCTGTTGGTGGCCAAGATGAGCGTGGGACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATG
CCCTATCAGTGGGAATATCCGTATTTGTTGAGCATTGTGCCCTCTGTCTTGGGCCTGCTCTCCTTCCCTC
GGAACAACATTAGCTACCTGGTGCTCTCCATGATCAGCATGGGGCTCTTCTCCATCGCTCCCCTCATTTA
TGGCAGCATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCCTGTTT
GGTTTTTCTGCTGTCTCTGTCATGTACCTGGTGTTGGTACTGGCAGTCCAAGTTCATGCCTGGCAACTGT
ACTACAGCAAAAAACTCTTAGACTCTTGGTTCACCAGCACACAGGAGAAGAAACGGAAATGA

Translation (183 aa):
MASRAGPRAAGTDGSDFQHRERVAMHYQMSVTLKYEIKKLIYVHLVIWLLLVAKMSVGHLRLLSHDQVAM
PYQWEYPYLLSIVPSVLGLLSFPRNNISYLVLSMISMGLFSIAPLIYGSMEMFPAAQQLYRHGKAYRFLF
GFSAVSVMYLVLVLAVQVHAWQLYYSKKLLDSWFTSTQEKKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH