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Report for CCDS24862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24862.1 Public Mus musculus 11 Cfap52 23 108 98 CCDS HistoryNCBI Gene:71860Re-query CCDS DB by CCDS ID:24862.1Re-query CCDS DB by GeneID:71860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021287.11 ENSMUSP00000021287.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021287.11Link to Ensembl Protein Viewer:ENSMUSP00000021287.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021287Re-query CCDS DB by Protein ID:ENSMUSP00000021287
Original member Current member NCBI NM_027963.2 NP_082239.2 Accepted alive Link to Nucleotide Sequence:NM_027963.2Link to Protein Sequence:NP_082239.2Re-query CCDS DB by Nucleotide ID:NM_027963Re-query CCDS DB by Protein ID:NP_082239Link to BLAST:NP_082239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082239.2 620 Q5F201-1 620 100% 0 0

Chromosomal Locations for CCDS 24862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67925093 67925268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67926379 67926490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67927309 67927411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67930729 67930880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67931724 67931869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67935824 67935972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67938917 67939087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67939779 67939879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67945353 67945469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67946298 67946397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67949568 67949696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67953481 67953617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67953972 67954171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67965522 67965591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGAAGAACAAGTTTTACCCGAGCTGGATGTAGCAGAACTGGAGCTTCAGGCTGTGATCGGCTTCAATG
GACATGTTCCCAATGGTCTCAAATGCCATCCTGACCAGGAGCACCTGATTTATCCCCTGGGTTGCACTGT
CCTCATCCAGGCAATAAATACTAATGAGCAGAATTTCCTACATGGCCATGGTAACAACGTCTCCTGTGTG
ACCATCTCCAAGGAAGGAGATTATATTGCCTCTGGACAAGTCACCTTCATGGGTTTCAAGGCAGACATCA
TTCTGTGGGACTTTAAGAAGAGGGAGCTGATCGCTCGGCTGTCACTTCACAAGGGCAAAATCGAAGCCTT
GGCCTTTTCGCCCAATGATTTGTACTTGGTTTCACTTGGTGGCCCAGATGATGGAAGTGTGGTGGTTTGG
AGCATAGCCAAGAGAGATGCCATTTGTGGCAGCCCCGCGGCGGGCCTCAATGTCGGCAATGCCACCAGCG
TGGTCTTCTCTAGGTGCCGAGATGAGATGTTTGTCACTGCTGGGAATGGGACAATTCGAGTGTGGGAACT
GGATCTTCCAAATAGAAAAATCTGGCCAACCGAGTGCCAAACAGGACAGATGAAAAGAATAGTCTTGAGT
ACTGGAATGGCCGACGACGACAGCTTCTTCTACCTTGGCACCACAACCGGGGATATTCTCAAAATGAACC
CCAAGACCAAACTGCTGGCAGATACTGGGCCTGTGAAGGACAAATTCAGCTTGGGAGTGTCGGCTCTCAG
GTGCCTGAAGATGGGTGGTTTGTTGGTCGGCTCTGGAGCTGGCTTGCTGATCTTCTGTAAAAGCCCCAGC
TACAAGCCTATCAAGAAAGTCCAGCTGCAAGGTGGTATCACCTCTATCACGCTCCGGGGAGAAGGACACC
AGTTTTTTGTGGGGACGGAAGAATCGCACATCTACCGCGTTAACTTCACCGATTTCAAAGAGACTCTCAT
TGCAACTTGTCACTTTGAAGCTGTCCAGGACATTGTCTTTCCATTTGGTACTGCTGAGCTGTTTGCTACC
TGTGCCAAGAAAGACATCAGGGTGTGGCACACCATGTCCAAACGGGAGCTGCTTCGGATCACGGTGCCCA
ACATGACCTGCCATGGCATTGACTTCATGAGAGATGGGAAGAGCATCATCTCAGCATGGGATGATGGAAA
AATCAGAGCCTTTGCTCCAGAATCAGGTCGGCTGATGTACACCATTAACAGTGCTCACAGGATCGGAGTG
ACGGCCATTGCTACCACCAGTGACTGTAAAAGGATCATCAGTGGAGGAGGAGAAGGGGAGGTGAGGGTGT
GGCAGGTAGGCTGCCAGACTCAGAAGCTGGAGGAGGCTCTGAAGGAGCACAAGTCTTCCGTGTCCTGCAT
CAGGGTGAAGAAGAACAACGAGGAGTGTGTCACTGCCAGCACCGATGGGACATGCATCATTTGGGACCTC
GTGCGACTTAGAAGGAATCAGATGATCCTGGCCAACACCCTATTCCAGTGTGTTTGTTACCACCCGGAAG
AATTCCAGATCATCACCAGTGGCACAGACAGGAAGATTGCTTACTGGGAAGTATTTGATGGATCAGTAAT
CAGAGAGTTGGAAGGCTCCTTGTCTGGGTCCATCAATGGTATGGATATCACTCAGGAAGGAGGGCACTTT
GTTACAGGTGGCCATGACCATCTGGTCAAAGTCTGGGACTACAACGAGGGTGAAGTGACTCACGTCGGGG
TGGGGCACAGCGGCAACATCATGGCCATGCGGATAAGTCCAGGAAACCAGTATATCGTCAGTGTGAGCGC
AGATGGAGCCATCTTGAGGTGGAAATACCCATTTGCTTCGTGA

Translation (620 aa):
MEEQVLPELDVAELELQAVIGFNGHVPNGLKCHPDQEHLIYPLGCTVLIQAINTNEQNFLHGHGNNVSCV
TISKEGDYIASGQVTFMGFKADIILWDFKKRELIARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVW
SIAKRDAICGSPAAGLNVGNATSVVFSRCRDEMFVTAGNGTIRVWELDLPNRKIWPTECQTGQMKRIVLS
TGMADDDSFFYLGTTTGDILKMNPKTKLLADTGPVKDKFSLGVSALRCLKMGGLLVGSGAGLLIFCKSPS
YKPIKKVQLQGGITSITLRGEGHQFFVGTEESHIYRVNFTDFKETLIATCHFEAVQDIVFPFGTAELFAT
CAKKDIRVWHTMSKRELLRITVPNMTCHGIDFMRDGKSIISAWDDGKIRAFAPESGRLMYTINSAHRIGV
TAIATTSDCKRIISGGGEGEVRVWQVGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTASTDGTCIIWDL
VRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIRELEGSLSGSINGMDITQEGGHF
VTGGHDHLVKVWDYNEGEVTHVGVGHSGNIMAMRISPGNQYIVSVSADGAILRWKYPFAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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