NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43849.1 Public Homo sapiens 9 FGD3 24 110 108 CCDS HistoryNCBI Gene:89846Re-query CCDS DB by CCDS ID:43849.1Re-query CCDS DB by GeneID:89846See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337352.10 ENSP00000336914.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337352.10Link to Ensembl Protein Viewer:ENSP00000336914.6Re-query CCDS DB by Nucleotide ID:ENST00000337352Re-query CCDS DB by Protein ID:ENSP00000336914
Original member Current member EBI ENST00000375482.8 ENSP00000364631.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375482.8Link to Ensembl Protein Viewer:ENSP00000364631.3Re-query CCDS DB by Nucleotide ID:ENST00000375482Re-query CCDS DB by Protein ID:ENSP00000364631
Original member Current member EBI ENST00000468206.6 ENSP00000496819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468206.6Link to Ensembl Protein Viewer:ENSP00000496819.1Re-query CCDS DB by Nucleotide ID:ENST00000468206Re-query CCDS DB by Protein ID:ENSP00000496819
Original member Current member NCBI NM_001083536.2 NP_001077005.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083536.2Link to Protein Sequence:NP_001077005.1Re-query CCDS DB by Nucleotide ID:NM_001083536Re-query CCDS DB by Protein ID:NP_001077005Link to BLAST:NP_001077005.1
Original member Current member NCBI NM_001369951.1 NP_001356880.1 Accepted alive Link to Nucleotide Sequence:NM_001369951.1Link to Protein Sequence:NP_001356880.1Re-query CCDS DB by Nucleotide ID:NM_001369951Re-query CCDS DB by Protein ID:NP_001356880Link to BLAST:NP_001356880.1
Original member Current member NCBI NM_033086.3 NP_149077.2 Accepted alive Link to Nucleotide Sequence:NM_033086.3Link to Protein Sequence:NP_149077.2Re-query CCDS DB by Nucleotide ID:NM_033086Re-query CCDS DB by Protein ID:NP_149077Link to BLAST:NP_149077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077005.1 725 Q5JSP0-1 725 100% 0 0
NP_001356880.1 725 Q5JSP0-1 725 100% 0 0
NP_149077.2 725 Q5JSP0-1 725 100% 0 0

Chromosomal Locations for CCDS 43849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92976257 92976709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93002925 93003014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93004001 93004137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93006024 93006180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93010246 93010384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93011214 93011272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93013852 93013998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93015737 93015829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93018136 93018215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93019831 93019861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93020317 93020424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93022327 93022389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93029874 93029996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93032769 93032873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93034541 93034681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93035338 93035589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGAGTCAGGCAGGGGGTCCTCAACCCCTCCAGGACCCATTGCTGCCCTAGGGATGCCAGACACTGGGC
CTGGCAGTTCCTCCCTAGGGAAGCTTCAGGCGCTCCCTGTTGGGCCCAGAGCCCACTGTGGGGACCCTGT
CAGCCTGGCTGCAGCAGGGGACGGCTCTCCAGACATAGGCCCCACGGGAGAGCTGAGTGGTAGCTTAAAG
ATCCCCAACCGGGACAGCGGGATCGACAGTCCCTCCTCCAGTGTGGCTGGAGAGAACTTTCCCTGCGAGG
AGGGCTTGGAGGCTGGCCCAAGCCCCACTGTACTGGGGGCGCACGCAGAGATGGCCCTGGACAGCCAGGT
CCCGAAGGTCACCCCCCAGGAGGAGGCGGACAGCGACGTGGGTGAGGAACCTGACTCTGAGAACACCCCC
CAGAAGGCTGACAAGGATGCCGGCCTGGCCCAGCACTCTGGCCCCCAGAAGCTTCTCCACATTGCCCAGG
AGCTCCTGCACACCGAGGAGACCTATGTGAAGCGGCTGCACCTGCTGGACCAGGTTTTCTGCACCAGGCT
GACGGATGCGGGGATCCCTCCAGAAGTCATCATGGGCATATTCTCTAACATCTCCTCCATCCACCGCTTC
CACGGGCAGTTCCTGCTGCCGGAGCTGAAGACGCGGATCACGGAGGAGTGGGACACAAACCCACGGCTCG
GGGACATCCTGCAGAAGCTGGCCCCATTCCTGAAGATGTACGGCGAGTATGTCAAGAACTTTGACCGAGC
CGTAGGGCTGGTGAGCACGTGGACCCAGCGCTCCCCACTGTTTAAAGACGTCGTCCACAGCATCCAGAAG
CAGGAGGTATGCGGGAACCTGACGCTGCAGCACCACATGCTGGAGCCCGTGCAGAGGGTCCCCCGGTACG
AGCTGCTGCTCAAGGACTATCTGAAGAGGCTCCCGCAGGACGCCCCAGACCGGAAGGATGCGGAGAGGTC
CTTGGAGCTCATCTCCACAGCCGCCAACCACTCCAATGCTGCCATTCGGAAAGTGGAGAAAATGCACAAG
CTCTTGGAGGTGTACGAGCAGCTGGGTGGGGAAGAAGACATTGTCAACCCGGCCAATGAACTGATCAAGG
AGGGCCAAATCCAGAAACTGTCAGCCAAGAACGGCACCCCCCAGGACCGCCACCTCTTCCTGTTCAACAG
CATGATCCTTTACTGTGTGCCCAAGCTGCGGCTCATGGGCCAGAAGTTCAGCGTCCGGGAGAAGATGGAC
ATCTCAGGCCTCCAGGTGCAGGATATCGTCAAGCCAAACACAGCACATACATTCATCATAACAGGAAGAA
AAAGGTCCCTGGAGCTGCAGACGCGGACAGAGGAAGAGAAGAAAGAATGGATTCAGATCATCCAGGCCAC
CATCGAGAAGCACAAACAGAACAGCGAAACCTTCAAGGCTTTTGGTGGCGCCTTCAGCCAGGATGAGGAC
CCCAGCCTCTCTCCAGACATGCCTATCACGAGCACCAGCCCTGTGGAGCCTGTGGTGACCACCGAAGGCA
GTTCGGGTGCAGCAGGGCTCGAGCCCAGAAAACTATCCTCTAAGACCAGACGTGACAAGGAGAAGCAGAG
CTGTAAGAGCTGTGGTGAGACCTTCAACTCCATCACCAAGAGGAGGCATCACTGCAAGCTGTGTGGGGCG
GTCATCTGTGGGAAGTGCTCCGAGTTCAAGGCCGAGAACAGCCGGCAGAGCCGTGTCTGCAGAGATTGTT
TCCTGACACAGCCAGTGGCCCCTGAGAGCACAGAGAAGACACCCACTGCAGACCCCCAGCCCAGCCTGCT
CTGCGGCCCCCTGCGGCTGTCAGAGAGCGGTGAGACCTGGAGCGAGGTGTGGGCCGCCATCCCCATGTCA
GATCCCCAGGTGCTGCACCTGCAGGGAGGCAGCCAGGACGGCCGGCTGCCCCGCACCATCCCTCTCCCCA
GCTGCAAACTGAGTGTGCCGGACCCTGAGGAGAGGCTGGACTCGGGGCATGTGTGGAAGCTGCAGTGGGC
CAAGCAGTCCTGGTACCTGAGCGCCTCCTCCGCAGAGCTGCAGCAGCAGTGGCTGGAAACCCTAAGCACT
GCTGCCCATGGGGACACGGCCCAGGACAGCCCGGGGGCCCTGCAGCTTCAGGTCCCTATGGGCGCAGCTG
CTCCGTGA

Translation (725 aa):
MESGRGSSTPPGPIAALGMPDTGPGSSSLGKLQALPVGPRAHCGDPVSLAAAGDGSPDIGPTGELSGSLK
IPNRDSGIDSPSSSVAGENFPCEEGLEAGPSPTVLGAHAEMALDSQVPKVTPQEEADSDVGEEPDSENTP
QKADKDAGLAQHSGPQKLLHIAQELLHTEETYVKRLHLLDQVFCTRLTDAGIPPEVIMGIFSNISSIHRF
HGQFLLPELKTRITEEWDTNPRLGDILQKLAPFLKMYGEYVKNFDRAVGLVSTWTQRSPLFKDVVHSIQK
QEVCGNLTLQHHMLEPVQRVPRYELLLKDYLKRLPQDAPDRKDAERSLELISTAANHSNAAIRKVEKMHK
LLEVYEQLGGEEDIVNPANELIKEGQIQKLSAKNGTPQDRHLFLFNSMILYCVPKLRLMGQKFSVREKMD
ISGLQVQDIVKPNTAHTFIITGRKRSLELQTRTEEEKKEWIQIIQATIEKHKQNSETFKAFGGAFSQDED
PSLSPDMPITSTSPVEPVVTTEGSSGAAGLEPRKLSSKTRRDKEKQSCKSCGETFNSITKRRHHCKLCGA
VICGKCSEFKAENSRQSRVCRDCFLTQPVAPESTEKTPTADPQPSLLCGPLRLSESGETWSEVWAAIPMS
DPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLST
AAHGDTAQDSPGALQLQVPMGAAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH