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Report for CCDS16431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16431.1 Public Mus musculus 2 Cstpp1 23 108 98 CCDS HistoryNCBI Gene:228356Re-query CCDS DB by CCDS ID:16431.1Re-query CCDS DB by GeneID:228356See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102594.10 ENSMUSP00000099654.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102594.10Link to Ensembl Protein Viewer:ENSMUSP00000099654.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102594Re-query CCDS DB by Protein ID:ENSMUSP00000099654
Original member Current member NCBI NM_175123.5 NP_780332.1 Accepted alive Link to Nucleotide Sequence:NM_175123.5Link to Protein Sequence:NP_780332.1Re-query CCDS DB by Nucleotide ID:NM_175123Re-query CCDS DB by Protein ID:NP_780332Link to BLAST:NP_780332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780332.1 331 Q8BHR8-1 331 100% 0 0

Chromosomal Locations for CCDS 16431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91278783 91278957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91279190 91279253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91281746 91281855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91282465 91282660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91284235 91284320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91304749 91304833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91383729 91383859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91421866 91421968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91444569 91444614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGCTGAGTCCCGAGCGCCTAGCTCTACCGGACTACGAGTATCTGGCTCAGAGACATGTCCTCACGTACA
TGGAGGATGCAGTGTGCCAGCTGCTGGAGAACAGGGAGGATATTAGCCAGTATGGCATTGCCCGGTTCTT
CACTGACTATTTTAACAGCGTATGCCAAGGAACTCACATTCTCTTCCGGGAATTCAGCTTTATACAAGCC
ACACCTCATAATAGAGCATCATTCCTTCGGGCCTTCTGGAGATGCTTCCGAACTGTAGGGAAAAATGGTG
ACCTGCTGACCATGAGGGAGTACCACTGTCTGCTGCAGTTATTGTGCCCAGACTTCCCGCTGGAGCTTAC
TCAGAAAGCCGCCAGGATTGTGCTCATGGATGATGCCATGGACTGCCTGATGTCTTTTTCAGATTTCCTT
TTCGCCTTCCAGATCCAGTTTTATTACTCAGAATTCCTGGAGAGTGTGGCTGCCATCTATCAGGACTTGC
TATCTGGGAAAAACCCCAATACAGTGATTGTCCCAACATCATCCAGTGGGCAACACCGCCAACGACCTGC
CTTGGGTGATGCCGGTATGCTGGATGGAGTGGAAGCATCACTGTTCTATCAGCGCCTGGAAAACCTGTGT
GACCGGCACAAGTACAGCTGTCCACCACCAGCGCTTGTCAAAGAGATCCTGAGCAATGTCCAGAGGCTGA
CTTTCTATGGATTCCTTGTGGCCCTCTCAAAGCATCATGGGATCAACCAAGCCCTGGGAGCTTTGCCAGA
CAAAGGAGACCTGATGCACGACCCAGCCATGGATGAAGAGCTGGAACGGCTGCTGGTCCAGGTCCCAGGC
CTGGTCAACTCCATCACTGCCACTTCTGAGGCCAGCTGCCTGCCTTCCCGAACCCCTCCCCGGGTTGGTT
CCCCGTGGAAACCCCTCCATCGCTCCCGCAAATTGGATGCAGAGAGCGATGGCTCCACTGAAGAGACAGA
TGAGTCTGAGACTTGA

Translation (331 aa):
MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTDYFNSVCQGTHILFREFSFIQA
TPHNRASFLRAFWRCFRTVGKNGDLLTMREYHCLLQLLCPDFPLELTQKAARIVLMDDAMDCLMSFSDFL
FAFQIQFYYSEFLESVAAIYQDLLSGKNPNTVIVPTSSSGQHRQRPALGDAGMLDGVEASLFYQRLENLC
DRHKYSCPPPALVKEILSNVQRLTFYGFLVALSKHHGINQALGALPDKGDLMHDPAMDEELERLLVQVPG
LVNSITATSEASCLPSRTPPRVGSPWKPLHRSRKLDAESDGSTEETDESET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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