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Report for CCDS38721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38721.1 Public Mus musculus 4 Ccl27a 23 108 98 CCDS HistoryNCBI Gene:20301Re-query CCDS DB by CCDS ID:38721.1Re-query CCDS DB by GeneID:20301See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108036.7 ENSMUSP00000103671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108036.7Link to Ensembl Protein Viewer:ENSMUSP00000103671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108036Re-query CCDS DB by Protein ID:ENSMUSP00000103671
Original member Current member EBI ENSMUST00000108037.8 ENSMUSP00000103672.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108037.8Link to Ensembl Protein Viewer:ENSMUSP00000103672.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108037Re-query CCDS DB by Protein ID:ENSMUSP00000103672
Original member Current member NCBI NM_001048179.2 NP_001041644.1 Accepted alive Link to Nucleotide Sequence:NM_001048179.2Link to Protein Sequence:NP_001041644.1Re-query CCDS DB by Nucleotide ID:NM_001048179Re-query CCDS DB by Protein ID:NP_001041644Link to BLAST:NP_001041644.1
Original member Current member NCBI NM_001361246.1 NP_001348175.1 Accepted alive Link to Nucleotide Sequence:NM_001361246.1Link to Protein Sequence:NP_001348175.1Re-query CCDS DB by Nucleotide ID:NM_001361246Re-query CCDS DB by Protein ID:NP_001348175Link to BLAST:NP_001348175.1

Chromosomal Locations for CCDS 38721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41769498 41769654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41769844 41769976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41771138 41771235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41773465 41773524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41773736 41773782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGTCGCGATTGAGGAGATACGAGGTGGCGCTGGAAGCGGAGGAGGAGATCTACTGGGGCTGCTTCTACT
TTTTTCCTTGGCTGCGAATGTGGCGCAGGGAGCGGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCT
GGAAGCCCCCAGCCTCCCACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTG
CCTCTGCCCTCCAGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGA
GGATTGTCCACATGGAACTGCAGGAGGCCGATGGGGACTGTCACCTCCAGGCTGTCGTGCTTCACCTGGC
TCGGCGCAGTGTCTGTGTTCATCCCCAGAACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGG
CTCCAAGGGACTGTACCCAGTTTAAATCTGGTACTACAAAAGAAAATGTACTCAAACCCCCAACAGCAAA
ACTAA

Translation (164 aa):
MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSPMSPTSQRLSLEAPSLPLRSWHPWNKTKQKQEAL
PLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKR
LQGTVPSLNLVLQKKMYSNPQQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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