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Report for CCDS84406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84406.1 Public Mus musculus 19 Mrpl21 23 108 98 CCDS HistoryNCBI Gene:353242Re-query CCDS DB by CCDS ID:84406.1Re-query CCDS DB by GeneID:353242See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025743.6 ENSMUSP00000025743.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025743.6Link to Ensembl Protein Viewer:ENSMUSP00000025743.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025743Re-query CCDS DB by Protein ID:ENSMUSP00000025743
Original member Current member NCBI NM_001347420.2 NP_001334349.1 Accepted alive Link to Nucleotide Sequence:NM_001347420.2Link to Protein Sequence:NP_001334349.1Re-query CCDS DB by Nucleotide ID:NM_001347420Re-query CCDS DB by Protein ID:NP_001334349Link to BLAST:NP_001334349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334349.1 209 Q9D1N9-1 209 100% 0 0

Chromosomal Locations for CCDS 84406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3283072 3283171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3284760 3284817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3285310 3285395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3286875 3287038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3287703 3287755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3288984 3289087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3290977 3291041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGCTGCTGCCATAGCGGCCTCGGCATTGCCGGGCGCCTTCGGGCGGCTGGTGTCTGTGTGTAGCCGTA
GCATCTTGGCATCCCAGGGATCCGGATCAGCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAG
CGCTTCATATCCACAAGGATATGTTCCTAAGACCTCCCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTG
CCGGACCCTGTTGAAGAGACGAGACACCATGCGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGG
GCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCT
GATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGGTCCTGCTGGTT
GGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCGAAAGGAGCTTGTACGAGTTGAAGCCACAG
TCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAA
AAAAATCATTGTGAACCCTCAGACCATCCTCCGCATTAACACCATTGAGATTGCACCTCGTTTGCTGTGA

Translation (209 aa):
MAAAIAASALPGAFGRLVSVCSRSILASQGSGSASLWSASRRFNSQSASYPQGYVPKTSLSSPPWQEVVL
PDPVEETRHHAEVVKRVNELIATGQYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLV
GADNFTLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIAPRLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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