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Report for CCDS29200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29200.1 Public Mus musculus 18 Rnf14 23 108 98 CCDS HistoryNCBI Gene:56736Re-query CCDS DB by CCDS ID:29200.1Re-query CCDS DB by GeneID:56736See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072376.12 ENSMUSP00000072212.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072376.12Link to Ensembl Protein Viewer:ENSMUSP00000072212.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072376Re-query CCDS DB by Protein ID:ENSMUSP00000072212
Original member Current member EBI ENSMUST00000171461.2 ENSMUSP00000126205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171461.2Link to Ensembl Protein Viewer:ENSMUSP00000126205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171461Re-query CCDS DB by Protein ID:ENSMUSP00000126205
Original member Current member EBI ENSMUST00000236116.1 ENSMUSP00000157833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236116.1Link to Ensembl Protein Viewer:ENSMUSP00000157833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236116Re-query CCDS DB by Protein ID:ENSMUSP00000157833
Original member Current member NCBI NM_001164621.1 NP_001158093.1 Accepted alive Link to Nucleotide Sequence:NM_001164621.1Link to Protein Sequence:NP_001158093.1Re-query CCDS DB by Nucleotide ID:NM_001164621Re-query CCDS DB by Protein ID:NP_001158093Link to BLAST:NP_001158093.1
Original member Current member NCBI NM_001361264.1 NP_001348193.1 Accepted alive Link to Nucleotide Sequence:NM_001361264.1Link to Protein Sequence:NP_001348193.1Re-query CCDS DB by Nucleotide ID:NM_001361264Re-query CCDS DB by Protein ID:NP_001348193Link to BLAST:NP_001348193.1
Original member Current member NCBI NM_001361265.1 NP_001348194.1 Accepted alive Link to Nucleotide Sequence:NM_001361265.1Link to Protein Sequence:NP_001348194.1Re-query CCDS DB by Nucleotide ID:NM_001361265Re-query CCDS DB by Protein ID:NP_001348194Link to BLAST:NP_001348194.1
Original member Current member NCBI NM_001361266.1 NP_001348195.1 Accepted alive Link to Nucleotide Sequence:NM_001361266.1Link to Protein Sequence:NP_001348195.1Re-query CCDS DB by Nucleotide ID:NM_001361266Re-query CCDS DB by Protein ID:NP_001348195Link to BLAST:NP_001348195.1
Original member Current member NCBI NM_001361267.1 NP_001348196.1 Accepted alive Link to Nucleotide Sequence:NM_001361267.1Link to Protein Sequence:NP_001348196.1Re-query CCDS DB by Nucleotide ID:NM_001361267Re-query CCDS DB by Protein ID:NP_001348196Link to BLAST:NP_001348196.1
Original member Current member NCBI NM_001361268.1 NP_001348197.1 Accepted alive Link to Nucleotide Sequence:NM_001361268.1Link to Protein Sequence:NP_001348197.1Re-query CCDS DB by Nucleotide ID:NM_001361268Re-query CCDS DB by Protein ID:NP_001348197Link to BLAST:NP_001348197.1
Original member Current member NCBI NM_001361269.1 NP_001348198.1 Accepted alive Link to Nucleotide Sequence:NM_001361269.1Link to Protein Sequence:NP_001348198.1Re-query CCDS DB by Nucleotide ID:NM_001361269Re-query CCDS DB by Protein ID:NP_001348198Link to BLAST:NP_001348198.1
Original member Current member NCBI NM_020012.2 NP_064396.2 Accepted alive Link to Nucleotide Sequence:NM_020012.2Link to Protein Sequence:NP_064396.2Re-query CCDS DB by Nucleotide ID:NM_020012Re-query CCDS DB by Protein ID:NP_064396Link to BLAST:NP_064396.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158093.1 485 Q9JI90-1 485 100% 0 0
NP_001348193.1 485 Q9JI90-1 485 100% 0 0
NP_001348194.1 485 Q9JI90-1 485 100% 0 0
NP_001348195.1 485 Q9JI90-1 485 100% 0 0
NP_001348196.1 485 Q9JI90-1 485 100% 0 0
NP_001348197.1 485 Q9JI90-1 485 100% 0 0
NP_001348198.1 485 Q9JI90-1 485 100% 0 0
NP_064396.2 485 Q9JI90-1 485 100% 0 0

Chromosomal Locations for CCDS 29200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 38300437 38300590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38301656 38301807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38307865 38308395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38309485 38309713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38313212 38313384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38314673 38314803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38316525 38316612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACTGGCCCTGGCGAGTATTTATGATGCGGATG
AATTTAGAAAAGCTGAGTCTGTCCAAGGAGGAGAAACCAGGATCTATTTGGATCTGCCACAGAATTTTAA
GATATTCGTGAGCGGCAATTCAAATGAGTCTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTG
CCACCACTTGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCCTCCCCACCTTCATTCACACTTA
GTGGCAAATGGCTGTCACCAACTCAGCTCTCTGCTCTCTGCAAGCACCTAGACAACCTGTGGGAAGAACA
CCGAGGCAGAGTGGTGCTGTTTGCCTGGATGCAGTTTCTTAAGGAGGAGACCCTCACCTACCTGAATATT
GTCTCTCCTTTTGAGCTCAAGATGGGGTCTCAGAAAAAAGTTCAGAGAAGGGCAACAGCCCAGGCCTCTT
CCAGCACAGAGCTTGGTGTGGGAGGAGCTGCTGCGGCGGATGTAGACCAAGAAGAAACTGTGGATGAGAG
AGCTGTACAGGATGTAGAGTCATTGTCAAGTCTGATCCAGGAGATCTTGGACTTCAATCAAGCTCGGCAG
ACGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGCATCTGTTTCTGTGAGAAGCTGGGTAGTGATTGCA
TGTACTTCTTGGAGTGCAAGCATGTATACTGCAAAGCCTGTCTGAAGGATTACTTTGAAATCCAGATCAA
AGATGGTCAAGTTAAATGCCTCAACTGTCCAGAGCCACAGTGCCCTTCAGTGGCGACTCCTGGTCAGGTC
AAAGAGCTGGTAGAAGCAGACTTGTTTGCTCGCTATGACCGTCTCCTCCTGCAGTCTACCTTGGATCTAA
TGGCAGATGTGGTGTATTGTCCCCGTCCATGCTGCCAGCTCCCTGTGATGCAAGAGCCTGGTGGTACCAT
GGCTATCTGCTCCAGCTGCAATTTTGCCTTCTGTACCTTATGCAGACTGACCTATCACGGGCTTTCTCCA
TGTAAGGTAACTGCAGAGAAATTAATAGACTTACGAAATGAATACCTACAAGCAGATGAAGCTACTAAGA
GGTTCTTGGAACAGAGGTATGGCAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAAAGTAAAGACTG
GCTGGAGAAGAACTCCAAGAGCTGCCCCTGCTGTGGCACACCCATACAGAAATTAGACGGCTGCAACAAG
ATGACTTGCACTGGCTGTATGCAGTATTTCTGCTGGATTTGCATGGGTTCTCTCTCTCGAGCAAATCCTT
ACAGACATTTCACTGATTCTGAGTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGATATTAATGGTGA
TATGTGGGAAGATGAAATTGAGGAGGACGACGATGATGAAGACGACGACGACGACTAG

Translation (485 aa):
MSAEDLEAQEDELLALASIYDADEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNESLQNSGFEYTICFL
PPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGRVVLFAWMQFLKEETLTYLNI
VSPFELKMGSQKKVQRRATAQASSSTELGVGGAAAADVDQEETVDERAVQDVESLSSLIQEILDFNQARQ
TKCFNSKLFLCSICFCEKLGSDCMYFLECKHVYCKACLKDYFEIQIKDGQVKCLNCPEPQCPSVATPGQV
KELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQLPVMQEPGGTMAICSSCNFAFCTLCRLTYHGLSP
CKVTAEKLIDLRNEYLQADEATKRFLEQRYGKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNK
MTCTGCMQYFCWICMGSLSRANPYRHFTDSESPCFNRLFHAVDINGDMWEDEIEEDDDDEDDDDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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