NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24059.1 Public Mus musculus 10 S1pr4 23 108 98 CCDS HistoryNCBI Gene:13611Re-query CCDS DB by CCDS ID:24059.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053646.6 ENSMUSP00000050412.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053646.6Link to Ensembl Protein Viewer:ENSMUSP00000050412.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053646Re-query CCDS DB by Protein ID:ENSMUSP00000050412
Original member Current member NCBI NM_010102.2 NP_034232.1 Accepted alive Link to Nucleotide Sequence:NM_010102.2Link to Protein Sequence:NP_034232.1Re-query CCDS DB by Nucleotide ID:NM_010102Re-query CCDS DB by Protein ID:NP_034232Link to BLAST:NP_034232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034232.1 386 Q9Z0L1 386 100% 0 0

Chromosomal Locations for CCDS 24059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81498478 81499638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGAACATCAGTACCTGGTCCACGCTGGTGACCCCAGAGTCCTGCCACCGGCTGGCAGCCAGCGGCCACA
GCCTCCTCATTGTCCTGCACTACAATCACAGCGGCAGGCTGGCCAGCCGCGGGGGCTCTGAGGACGGTGG
AGGGCTAGGGATGCTGAGGGGGCCGTCGGTGGCCGCAGGTTGCCTGGTGGTGCTGGAGAACGCCATGGTG
CTGGCCGCCATCGCCATCTACATGCGGTCCCGCCGCTGGGTGTACTACTGCCTGCTGAACATCACACTGA
GTGACCTGCTCACAGGCCTGGCCTACGTGGTCAACGTGCTGCTGTCAGGGACTCGTACCTTCCAGCTGTC
ACCGGTGCACTGGTTCCTGCGGGAGGGCCTGCTCTTCATGGCCTTGGCCGCATCCACCTTCAGTCTGCTC
TTCACGGCCGGCGAGCGCTTCGCCACCATGGTGCGGGTGGCTGAGAGTGGGGCCACCAAGACCAGCCGTG
TGTATGGCTGCATCGGTCTGTGCTGGCTACTGGCAGCTATCCTGGGCCTGCTGCCCCTGCTGGGCTGGAA
CTGTGTGTGCGCCTTCCCACGCTGCTCCAGCCTGCTGCCCCTCTACTCCAAGGGCTATGTGCTCTTTTGT
GTGGTGGTCTTCGCCCTCATCCTAGTGGCTATCCTGAGCCTCTACGGGGCCATCTTTAGAGTGGTCCGAG
CCAATGGGCAGAAGTCTCCACGTCCTCCTGCCCGCCGCAAGTCCCGCAGGCTACTCAACACCGTGCTGAT
GATCTTGGTGGCCTTTGTGGTGTGCTGGGGTCCCCTGTTTGGCCTGCTCCTGGCTGACATCTTTGGTTCT
AATGTCTGGGCCCAGGAGTACCTGCGTGGCATGGACTGGATCCTGGCCCTGGCCGTGTTCAACTCAGCCA
TTAATCCTCTCATCTACTCCTTCCGCAGCCGTGAGGTGCAGCGCGCTGTGCTGGCCTTCCTGTGCTGCGG
CTGTCTCTGGCTAGGTCTGCGAGGTCCAGGAGACTGCCTGACCCGGATCACCGAGGCCCACTCCGGTGCA
TCCACCACTGACAGCTCCCTGAGGCCCAGGGACAGTTTTCGGACTTCTCGGTCACTCAGCTTCAGGATGA
GAGAGCCGCTGTCCAGCATTTCCAGCGTCCGCAGCACCTAG

Translation (386 aa):
MNISTWSTLVTPESCHRLAASGHSLLIVLHYNHSGRLASRGGSEDGGGLGMLRGPSVAAGCLVVLENAMV
LAAIAIYMRSRRWVYYCLLNITLSDLLTGLAYVVNVLLSGTRTFQLSPVHWFLREGLLFMALAASTFSLL
FTAGERFATMVRVAESGATKTSRVYGCIGLCWLLAAILGLLPLLGWNCVCAFPRCSSLLPLYSKGYVLFC
VVVFALILVAILSLYGAIFRVVRANGQKSPRPPARRKSRRLLNTVLMILVAFVVCWGPLFGLLLADIFGS
NVWAQEYLRGMDWILALAVFNSAINPLIYSFRSREVQRAVLAFLCCGCLWLGLRGPGDCLTRITEAHSGA
STTDSSLRPRDSFRTSRSLSFRMREPLSSISSVRST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH