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Report for CCDS24904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24904.1 Public Mus musculus 11 Eif4a1 23 108 98 CCDS HistoryNCBI Gene:13681Re-query CCDS DB by CCDS ID:24904.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163666.2 ENSMUSP00000127034.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163666.2Link to Ensembl Protein Viewer:ENSMUSP00000127034.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163666Re-query CCDS DB by Protein ID:ENSMUSP00000127034
Original member Current member NCBI NM_144958.4 NP_659207.1 Accepted alive Link to Nucleotide Sequence:NM_144958.4Link to Protein Sequence:NP_659207.1Re-query CCDS DB by Nucleotide ID:NM_144958Re-query CCDS DB by Protein ID:NP_659207Link to BLAST:NP_659207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659207.1 406 P60843 406 100% 0 0

Chromosomal Locations for CCDS 24904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69667473 69667617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69667695 69667774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69668022 69668111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69668196 69668333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69668405 69668548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69668644 69668753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69669078 69669246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69670133 69670272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69670615 69670747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69670928 69670976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69672279 69672301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGTCTGCGAGTCAGGATTCTCGATCCAGAGACAATGGCCCCGACGGGATGGAGCCGGAAGGCGTCATCG
AGAGTAACTGGAACGAGATTGTGGATAGCTTTGATGACATGAATCTCTCAGAGTCCCTCCTCCGTGGTAT
TTATGCCTATGGTTTTGAGAAGCCCTCTGCCATCCAGCAGCGAGCTATTCTTCCTTGTATCAAGGGTTAT
GATGTGATTGCTCAAGCCCAGTCTGGGACTGGGAAAACAGCTACATTTGCCATATCAATTCTGCAGCAGA
TTGAATTAGATCTAAAGGCCACTCAGGCTTTGGTTCTGGCACCCACACGTGAATTGGCTCAGCAGATACA
AAAGGTGGTTATGGCATTAGGAGACTACATGGGTGCCTCTTGTCATGCCTGCATTGGGGGCACCAATGTG
CGTGCTGAGGTGCAGAAGCTGCAGATGGAAGCTCCCCATATCATCGTGGGTACCCCTGGCCGGGTGTTTG
ACATGCTTAACCGGAGATACCTGTCCCCCAAATACATCAAGATGTTCGTACTGGATGAAGCAGATGAAAT
GTTAAGCCGAGGGTTCAAGGATCAGATCTATGACATATTCCAGAAGCTCAACAGCAACACACAGGTAGTT
TTGTTGTCTGCTACAATGCCTTCTGATGTCCTTGAGGTGACCAAGAAATTTATGAGAGACCCTATTCGGA
TTCTTGTCAAGAAGGAAGAATTGACCCTGGAGGGTATCCGCCAATTCTACATCAATGTGGAACGAGAGGA
GTGGAAGCTTGACACATTGTGTGACTTGTATGAGACGCTGACCATCACCCAGGCAGTCATCTTTATCAAC
ACCAGAAGGAAGGTGGACTGGCTCACCGAGAAGATGCATGCCCGAGATTTCACTGTTTCTGCCATGCACG
GAGATATGGACCAAAAGGAACGAGATGTGATCATGAGGGAGTTCCGGTCTGGCTCTAGCAGAGTATTAAT
TACCACTGACCTGTTGGCCAGAGGCATTGATGTGCAGCAGGTCTCCTTAGTCATCAACTATGACCTTCCC
ACCAACAGGGAAAACTACATCCACAGAATCGGTCGAGGTGGTCGGTTTGGTCGTAAGGGTGTGGCTATTA
ACATGGTGACCGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACTTTCTACAACACCTCCATTGAAGA
GATGCCCCTCAACGTTGCTGACCTCATTTGA

Translation (406 aa):
MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY
DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV
RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV
LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFIN
TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP
TNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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