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Report for CCDS39522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39522.1 Public Mus musculus 6 Lrrtm1 23 108 98 CCDS HistoryNCBI Gene:74342Re-query CCDS DB by CCDS ID:39522.1Re-query CCDS DB by GeneID:74342See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020400.4 ENSMUSP00000020400.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020400.4Link to Ensembl Protein Viewer:ENSMUSP00000020400.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020400Re-query CCDS DB by Protein ID:ENSMUSP00000020400
Original member Current member EBI ENSMUST00000161677.1 ENSMUSP00000124373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161677.1Link to Ensembl Protein Viewer:ENSMUSP00000124373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161677Re-query CCDS DB by Protein ID:ENSMUSP00000124373
Original member Current member EBI ENSMUST00000159616.1 ENSMUSP00000125207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159616.1Link to Ensembl Protein Viewer:ENSMUSP00000125207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159616Re-query CCDS DB by Protein ID:ENSMUSP00000125207
Original member Current member NCBI NM_001362109.1 NP_001349038.1 Accepted alive Link to Nucleotide Sequence:NM_001362109.1Link to Protein Sequence:NP_001349038.1Re-query CCDS DB by Nucleotide ID:NM_001362109Re-query CCDS DB by Protein ID:NP_001349038Link to BLAST:NP_001349038.1
Original member Current member NCBI NM_028880.4 NP_083156.2 Accepted alive Link to Nucleotide Sequence:NM_028880.4Link to Protein Sequence:NP_083156.2Re-query CCDS DB by Nucleotide ID:NM_028880Re-query CCDS DB by Protein ID:NP_083156Link to BLAST:NP_083156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349038.1 522 Q8K377 522 100% 0 0
NP_083156.2 522 Q8K377 522 100% 0 0

Chromosomal Locations for CCDS 39522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 77243562 77245130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGATTTCCTGCTACTCGGCCTCTGTCTACACTGGCTGCTGAGGAGGCCCTCGGGGGTGGTCTTGTGTC
TGCTGGGGGCCTGCTTTCAGATGCTGCCCGCCGCCCCCAGCGGATGCCCGGGGCAGTGTCGGTGCGAGGG
GCGGCTGCTGTACTGCGAGGCGCTCAACCTAACCGAGGCGCCCCATAACCTGTCCGGCCTGCTGGGCTTG
TCTTTGCGCTACAACAGCCTCTCGGAGCTGCGCGCCGGCCAGTTCACAGGGTTAATGCAGCTCACGTGGC
TGTATTTGGATCACAATCACATCTGCTCGGTGCAGGGGGACGCCTTTCAGAAACTGCGCCGAGTTAAGGA
ACTCACGCTGAGTTCCAACCAGATCACTGAACTGGCCAACACCACCTTCCGGCCCATGCCCAACCTGCGC
AGCGTGGACCTGTCCTATAACAAGCTGCAGGCGCTAGCTCCGGATCTCTTCCACGGGCTGCGGAAGCTCA
CCACCCTGCACATGCGGGCCAATGCCATCCAATTCGTGCCGGTGCGCATCTTTCAGGACTGCCGCAGCCT
CAAGTTTCTCGACATTGGATACAATCAGCTCAAGAGTCTGGCGCGCAACTCTTTCGCCGGCTTGTTCAAG
CTCACAGAGCTACACCTGGAGCATAATGACTTGATCAAGGTGAACTTCGCCCATTTCCCGCGCCTCATCT
CCCTGCACTCGCTCTGCCTGAGGCGGAATAAGGTTGCCATTGTGGTCAGCTCTCTCGACTGGGTTTGGAA
TTTGGAGAAAATGGACTTGTCTGGGAACGAGATCGAATACATGGAGCCCCATGTGTTCGAGACCGTTCCC
TACCTGCAGACCCTGCAGCTGGACTCCAACCGCCTCACCTACATTGAGCCCCGTATTCTCAACTCCTGGA
AGTCCCTTACGAGCATCACTCTGGCCGGGAACCTGTGGGACTGCGGGCGCAACGTGTGTGCTCTAGCTTC
CTGGCTCAGCAACTTCCAGGGACGTTACGATGCTAACTTGCAGTGCGCCAGCCCAGAGTACGCACAGGGC
GAGGACGTCTTGGATGCAGTGTATGCTTTCCACCTGTGTGAGGATGGGGCCGAGCCCACCAGCGGCCACC
TCCTGTCGGTGGCCGTCACTAACCGCAGTGACCTAACGCCCCCAGAGAGCTCAGCCACGACTCTGGTGGA
CGGTGGGGAGGGGCACGATGGCACGTTTGAGCCCATCACTGTGGCTCTTCCAGGCGGCGAGCACGCAGAG
AACGCTGTGCAAATCCACAAAGTGGTCACTGGCACCATGGCCCTCATCTTCTCCTTCCTCATCGTGGTCC
TCGTACTCTACGTATCCTGGAAGTGTTTCCCAGCCAGCCTCAGGCAGCTCAGACAGTGCTTTGTCACGCA
GCGCAGGAAGCAGAAGCAGAAACAGACCATGCATCAGATGGCTGCTATGTCTGCCCAGGAATACTATGTT
GATTACAAACCTAACCACATCGAGGGGGCCCTGGTTATCATCAACGAGTACGGTTCGTGTACCTGTCACC
AGCAGCCTGCGAGGGAATGCGAGGTGTGA

Translation (522 aa):
MDFLLLGLCLHWLLRRPSGVVLCLLGACFQMLPAAPSGCPGQCRCEGRLLYCEALNLTEAPHNLSGLLGL
SLRYNSLSELRAGQFTGLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITELANTTFRPMPNLR
SVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFK
LTELHLEHNDLIKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVFETVP
YLQTLQLDSNRLTYIEPRILNSWKSLTSITLAGNLWDCGRNVCALASWLSNFQGRYDANLQCASPEYAQG
EDVLDAVYAFHLCEDGAEPTSGHLLSVAVTNRSDLTPPESSATTLVDGGEGHDGTFEPITVALPGGEHAE
NAVQIHKVVTGTMALIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYV
DYKPNHIEGALVIINEYGSCTCHQQPARECEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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