NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5992.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5992.2 Public Homo sapiens 8 SGCZ 24 110 108 CCDS HistoryNCBI Gene:137868Re-query CCDS DB by CCDS ID:5992.2See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5992.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382080.6 ENSP00000371512.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382080.6Link to Ensembl Protein Viewer:ENSP00000371512.1Re-query CCDS DB by Nucleotide ID:ENST00000382080Re-query CCDS DB by Protein ID:ENSP00000371512
Original member Current member NCBI NM_139167.4 NP_631906.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139167.4Link to Protein Sequence:NP_631906.2Re-query CCDS DB by Nucleotide ID:NM_139167Re-query CCDS DB by Protein ID:NP_631906Link to BLAST:NP_631906.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631906.2 312 Q96LD1-2 312 100% 0 0

Chromosomal Locations for CCDS 5992.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 14090443 14090637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14102376 14102499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14108163 14108235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14164580 14164702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14237592 14237679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14324103 14324204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14554732 14554926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 15237585 15237623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGACAGATCAACGAACCTGGACATTGAGGAGCTCAAGATGACACGAGAACAATACATACTAGCAACCC
AACAGAATAACCTGCCAAGGACTGAGAATGCACAACTTTACCCAGTGGGAATTTATGGATGGCGAAAGAG
GTGCTTATACTTCTTTGTCCTTCTGCTGTTGGTTACCATGATAGTTAACTTAGCCATGACAATATGGATA
TTGAAAGTTATGAATTTCACTGTGGATGGTATGGGAAATCTGAGAGTCACCAAGAAGGGAATCCGACTTG
AAGGTATATCTGAGTTTCTACTTCCATTGTATGTGAAAGAAATTCATTCTCGAAAGGATAGTCCGCTGGT
CTTACAGTCTGACAGGAATGTCACAGTGAATGCAAGAAATCACATGGGGCAGTTAACCGGACAGCTGACC
ATAGGAGCTGATGCTGTGGAAGCTCAGTGTAAAAGATTTGAAGTGAGAGCCAGTGAAGATGGCAGGGTGC
TGTTTTCTGCAGATGAAGATGAGATTACCATTGGGGCTGAAAAGCTGAAAGTTACAGGCACTGAAGGAGC
CGTATTTGGGCACTCTGTGGAGACGCCGCACATCAGAGCAGAGCCATCCCAAGATCTCAGGCTTGAATCA
CCCACCAGATCCTTGATCATGGAAGCTCCCCGTGGGGTCCAGGTGAGTGCTGCTGCAGGAGACTTCAAGG
CCACCTGCAGGAAGGAGCTCCATCTGCAATCTACAGAAGGGGAGATATTTTTAAATGCAGAGACAATCAA
GCTGGGAAATCTACCAACTGGCTCCTTCTCATCTTCTTCACCCAGCTCCTCAAGTTCTCGACAGACAGTG
TATGAACTCTGCGTCTGCCCCAATGGCAAACTTTACCTTTCTCCAGCAGGAGTAGGTTCCACTTGTCAGT
CCAGTAGCAACATCTGCCTGTGGAGCTGA

Translation (312 aa):
MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWI
LKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLT
IGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLRLES
PTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTV
YELCVCPNGKLYLSPAGVGSTCQSSSNICLWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH