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Report for CCDS13839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13839.1 Public Homo sapiens 22 TPST2 24 110 108 CCDS HistoryNCBI Gene:8459Re-query CCDS DB by CCDS ID:13839.1Re-query CCDS DB by GeneID:8459See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338754.9 ENSP00000339813.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338754.9Link to Ensembl Protein Viewer:ENSP00000339813.4Re-query CCDS DB by Nucleotide ID:ENST00000338754Re-query CCDS DB by Protein ID:ENSP00000339813
Original member Current member EBI ENST00000398110.6 ENSP00000381180.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398110.6Link to Ensembl Protein Viewer:ENSP00000381180.2Re-query CCDS DB by Nucleotide ID:ENST00000398110Re-query CCDS DB by Protein ID:ENSP00000381180
Original member Current member EBI ENST00000403880.5 ENSP00000385192.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403880.5Link to Ensembl Protein Viewer:ENSP00000385192.1Re-query CCDS DB by Nucleotide ID:ENST00000403880Re-query CCDS DB by Protein ID:ENSP00000385192
Original member Current member EBI ENST00000454778.6 ENSP00000400357.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454778.6Link to Ensembl Protein Viewer:ENSP00000400357.2Re-query CCDS DB by Nucleotide ID:ENST00000454778Re-query CCDS DB by Protein ID:ENSP00000400357
Original member Current member NCBI NM_001008566.3 NP_001008566.1 Accepted alive Link to Nucleotide Sequence:NM_001008566.3Link to Protein Sequence:NP_001008566.1Re-query CCDS DB by Nucleotide ID:NM_001008566Re-query CCDS DB by Protein ID:NP_001008566Link to BLAST:NP_001008566.1
Original member Current member NCBI NM_001362922.2 NP_001349851.1 Accepted alive Link to Nucleotide Sequence:NM_001362922.2Link to Protein Sequence:NP_001349851.1Re-query CCDS DB by Nucleotide ID:NM_001362922Re-query CCDS DB by Protein ID:NP_001349851Link to BLAST:NP_001349851.1
Original member Current member NCBI NM_003595.5 NP_003586.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003595.5Link to Protein Sequence:NP_003586.3Re-query CCDS DB by Nucleotide ID:NM_003595Re-query CCDS DB by Protein ID:NP_003586Link to BLAST:NP_003586.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008566.1 377 O60704 377 100% 0 0
NP_001349851.1 377 O60704 377 100% 0 0
NP_003586.3 377 O60704 377 100% 0 0

Chromosomal Locations for CCDS 13839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 26528221 26528262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26532695 26532745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26536288 26536486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26540789 26541630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGCGCCTGTCGGTGCGGAGGGTGCTGCTGGCAGCCGGCTGCGCCCTGGTCCTGGTGCTGGCGGTTCAGC
TGGGACAGCAGGTGCTAGAGTGCCGGGCGGTGCTGGCGGGCCTGCGGAGCCCCCGGGGGGCCATGCGGCC
TGAGCAGGAGGAGCTGGTGATGGTGGGCACCAACCACGTGGAATACCGCTATGGCAAGGCCATGCCGCTC
ATCTTCGTGGGTGGCGTGCCTCGCAGTGGCACCACGTTGATGCGCGCCATGCTGGACGCGCACCCCGAGG
TGCGCTGCGGCGAGGAGACCCGCATCATCCCGCGCGTGCTGGCCATGCGCCAGGCCTGGTCCAAGTCTGG
CCGTGAGAAGCTGCGGCTGGATGAGGCGGGGGTGACGGATGAGGTGCTGGACGCCGCCATGCAGGCCTTC
ATCCTGGAGGTGATTGCCAAGCACGGAGAGCCGGCCCGCGTGCTCTGCAACAAGGACCCATTTACGCTCA
AGTCCTCGGTCTACCTGTCGCGCCTGTTCCCCAACTCCAAGTTCCTGCTGATGGTGCGGGACGGCCGGGC
CTCCGTGCACTCCATGATCACGCGCAAAGTCACCATTGCGGGCTTTGACCTCAGCAGCTACCGTGACTGC
CTCACCAAGTGGAACAAGGCCATCGAGGTGATGTACGCCCAGTGCATGGAGGTAGGCAAGGAGAAGTGCC
TGCCTGTGTACTACGAGCAGCTGGTGCTGCACCCCAGGCGCTCACTCAAGCTCATCCTCGACTTCCTCGG
CATCGCCTGGAGCGACGCTGTCCTCCACCATGAAGACCTCATTGGCAAGCCCGGTGGTGTCTCCCTGTCC
AAGATCGAGCGGTCCACGGACCAGGTCATCAAGCCTGTTAACCTGGAAGCGCTCTCCAAGTGGACTGGCC
ACATCCCTGGGGATGTGGTGCGGGACATGGCCCAGATCGCCCCCATGCTGGCTCAGCTCGGCTATGACCC
TTATGCAAACCCCCCCAACTATGGCAACCCTGACCCCTTCGTCATCAACAACACACAGCGGGTCTTGAAA
GGGGACTATAAAACACCAGCCAATCTGAAAGGATATTTTCAGGTGAACCAGAACAGCACCTCCTCCCACT
TAGGAAGCTCGTGA

Translation (377 aa):
MRLSVRRVLLAAGCALVLVLAVQLGQQVLECRAVLAGLRSPRGAMRPEQEELVMVGTNHVEYRYGKAMPL
IFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGREKLRLDEAGVTDEVLDAAMQAF
ILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDC
LTKWNKAIEVMYAQCMEVGKEKCLPVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLS
KIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLK
GDYKTPANLKGYFQVNQNSTSSHLGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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