NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10093.1 Public Homo sapiens 15 EPB42 24 110 108 CCDS HistoryNCBI Gene:2038Re-query CCDS DB by CCDS ID:10093.1Re-query CCDS DB by GeneID:2038See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000648595.1 ENSP00000497777.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648595.1Link to Ensembl Protein Viewer:ENSP00000497777.1Re-query CCDS DB by Nucleotide ID:ENST00000648595Re-query CCDS DB by Protein ID:ENSP00000497777
Original member Current member NCBI NM_000119.3 NP_000110.2 Accepted alive Link to Nucleotide Sequence:NM_000119.3Link to Protein Sequence:NP_000110.2Re-query CCDS DB by Nucleotide ID:NM_000119Re-query CCDS DB by Protein ID:NP_000110Link to BLAST:NP_000110.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000110.2 721 P16452-2 721 100% 0 0

Chromosomal Locations for CCDS 10093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43197302 43197464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43201844 43201977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43203115 43203275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43206330 43206629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43207199 43207441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43208230 43208333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43208637 43208775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43209274 43209451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43210335 43210439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43211416 43211534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43215095 43215328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43216268 43216453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43220726 43220825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGGGACAGGGTGAGCCAAGCCAGCGCTCGACAGGGCTTGCTGGACTGTATGCAGCCCCCGCAGCATCAC
CTGTTTTCATTAAAGGAAGTGGGATGGATGCCCTGGGTATCAAGAGCTGTGACTTTCAGGCAGCAAGAAA
CAATGAGGAGCACCACACCAAGGCCCTCAGCTCCCGGCGCCTCTTTGTGAGGAGGGGGCAGCCCTTCACC
ATCATCCTGTACTTCCGCGCTCCAGTCCGTGCATTTCTGCCTGCCCTGAAGAAGGTGGCCCTCACTGCAC
AAACTGGAGAGCAGCCTTCCAAGATCAACAGGACCCAAGCCACATTCCCAATTTCCAGTCTGGGGGACCG
AAAGTGGTGGAGTGCAGTGGTGGAGGAGAGAGATGCCCAGTCCTGGACCATCTCTGTGACCACACCTGCG
GACGCTGTCATTGGCCACTACTCGCTTCTGCTGCAGGTCTCAGGCAGGAAGCAACTCCTCTTGGGTCAGT
TCACACTGCTTTTTAACCCCTGGAATAGAGAGGATGCTGTGTTCCTGAAGAATGAGGCTCAGCGCATGGA
GTACTTGTTGAACCAGAATGGTCTCATCTACCTGGGTACAGCTGACTGCATCCAGGCAGAGTCCTGGGAC
TTTGGCCAGTTCGAGGGGGATGTCATTGACCTCAGCCTGCGCTTGCTGAGCAAGGACAAGCAGGTAGAGA
AGTGGAGCCAGCCGGTGCACGTGGCCCGTGTGTTGGGTGCCTTGCTGCATTTTCTCAAGGAGCAGAGGGT
CCTGCCCACCCCGCAGACCCAGGCCACCCAGGAAGGGGCCTTGCTGAACAAGCGCCGGGGCAGCGTGCCC
ATCCTGCGGCAGTGGCTCACCGGCCGAGGCCGACCTGTGTATGATGGCCAGGCCTGGGTGTTGGCTGCTG
TTGCTTGCACAGTGCTGCGATGCCTGGGAATCCCTGCCCGCGTGGTGACCACGTTTGCCTCAGCACAGGG
CACCGGTGGGCGTCTTCTCATAGATGAATACTATAATGAGGAGGGACTTCAGAACGGAGAAGGCCAGAGA
GGCAGAATCTGGATCTTCCAGACTTCCACAGAGTGCTGGATGACGCGGCCTGCCTTGCCCCAGGGTTATG
ATGGATGGCAGATTCTGCACCCAAGTGCTCCTAATGGAGGTGGAGTCCTGGGGTCCTGTGATCTGGTGCC
GGTCAGAGCAGTCAAGGAGGGGACGCTGGGGCTGACCCCAGCAGTGTCAGACCTTTTTGCTGCCATAAAT
GCCTCATGTGTGGTCTGGAAGTGCTGTGAGGATGGGACACTGGAGTTGACTGACTCCAACACAAAGTATG
TTGGCAACAACATCAGCACCAAGGGTGTGGGCAGTGACCGCTGCGAGGACATCACTCAGAACTACAAGTA
TCCTGAAGGGTCTCTTCAGGAAAAAGAGGTGCTGGAGAGAGTCGAGAAAGAGAAAATGGAACGTGAGAAA
GACAACGGCATCCGTCCTCCCAGTCTCGAGACTGCCAGTCCTCTGTACCTGCTCTTGAAAGCACCCAGCT
CCCTACCCCTGAGAGGGGATGCCCAGATCTCAGTGACGCTGGTTAATCACAGTGAGCAGGAGAAGGCAGT
GCAGCTGGCAATTGGGGTCCAGGCTGTACACTACAACGGTGTCCTTGCTGCCAAGCTCTGGAGGAAGAAG
CTGCACCTCACGCTCAGTGCCAACCTGGAAAAGATAATAACCATCGGCCTGTTCTTCTCCAATTTTGAGC
GAAACCCACCCGAGAACACCTTCCTTAGACTCACCGCCATGGCAACACACTCTGAATCCAACCTTAGCTG
CTTTGCTCAGGAAGACATTGCCATTTGTAGACCACACCTTGCCATCAAGATGCCAGAGAAAGCAGAGCAG
TATCAACCCCTCACAGCCTCAGTCAGCCTCCAGAACTCCCTAGATGCCCCCATGGAGGACTGTGTGATCT
CCATCCTGGGAAGGGGGCTCATTCACAGAGAGAGGAGCTACAGATTCCGTTCAGTGTGGCCTGAAAACAC
CATGTGTGCCAAGTTCCAGTTCACGCCAACACATGTGGGGCTCCAGAGACTCACTGTGGAAGTGGACTGC
AACATGTTCCAGAACCTAACCAACTATAAAAGCGTCACCGTGGTAGCCCCTGAACTATCAGCTTAA

Translation (721 aa):
MGQGEPSQRSTGLAGLYAAPAASPVFIKGSGMDALGIKSCDFQAARNNEEHHTKALSSRRLFVRRGQPFT
IILYFRAPVRAFLPALKKVALTAQTGEQPSKINRTQATFPISSLGDRKWWSAVVEERDAQSWTISVTTPA
DAVIGHYSLLLQVSGRKQLLLGQFTLLFNPWNREDAVFLKNEAQRMEYLLNQNGLIYLGTADCIQAESWD
FGQFEGDVIDLSLRLLSKDKQVEKWSQPVHVARVLGALLHFLKEQRVLPTPQTQATQEGALLNKRRGSVP
ILRQWLTGRGRPVYDGQAWVLAAVACTVLRCLGIPARVVTTFASAQGTGGRLLIDEYYNEEGLQNGEGQR
GRIWIFQTSTECWMTRPALPQGYDGWQILHPSAPNGGGVLGSCDLVPVRAVKEGTLGLTPAVSDLFAAIN
ASCVVWKCCEDGTLELTDSNTKYVGNNISTKGVGSDRCEDITQNYKYPEGSLQEKEVLERVEKEKMEREK
DNGIRPPSLETASPLYLLLKAPSSLPLRGDAQISVTLVNHSEQEKAVQLAIGVQAVHYNGVLAAKLWRKK
LHLTLSANLEKIITIGLFFSNFERNPPENTFLRLTAMATHSESNLSCFAQEDIAICRPHLAIKMPEKAEQ
YQPLTASVSLQNSLDAPMEDCVISILGRGLIHRERSYRFRSVWPENTMCAKFQFTPTHVGLQRLTVEVDC
NMFQNLTNYKSVTVVAPELSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH