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Report for CCDS35124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35124.1 Public Homo sapiens 9 OR1L8 24 110 108 CCDS HistoryNCBI Gene:138881Re-query CCDS DB by CCDS ID:35124.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641027.1 ENSP00000493411.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641027.1Link to Ensembl Protein Viewer:ENSP00000493411.1Re-query CCDS DB by Nucleotide ID:ENST00000641027Re-query CCDS DB by Protein ID:ENSP00000493411
Original member Current member NCBI NM_001004454.2 NP_001004454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004454.2Link to Protein Sequence:NP_001004454.1Re-query CCDS DB by Nucleotide ID:NM_001004454Re-query CCDS DB by Protein ID:NP_001004454Link to BLAST:NP_001004454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004454.1 309 Q8NGR8 309 100% 0 0

Chromosomal Locations for CCDS 35124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122567548 122568477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAAAGAATCAACCACACCAGCAGTGTCTCCGAGTTTATCCTCCTGGGACTCTCCTCCCGGCCTGAGG
ACCAAAAGACACTCTTTGTTCTCTTCCTCATCGTGTACCTGGTCACCATAACAGGGAACCTGCTCATCAT
CCTGGCCATTCGCTTCAACCCCCATCTTCAGACCCCTATGTATTTCTTCTTGAGTTTTCTGTCTCTCACT
GATATTTGCTTTACAACAAGCGTTGTCCCCAAGATGCTGATGAACTTCCTGTCAGAAAAGAAGACCATCT
CCTATGCTGGGTGTCTGACACAGATGTATTTTCTCTATGCCTTGGGCAACAGTGACAGCTGCCTTCTGGC
AGTCATGGCCTTTGACCGCTATGTGGCCGTCTGTGACCCTTTCCACTATGTCACCACCATGAGCCACCAC
CACTGTGTCCTGCTGGTGGCCTTCTCCTGCTCATTTCCTCACCTCCACTCACTCCTGCACACACTTCTGC
TGAATCGTCTCACCTTCTGTGACTCCAATGTTATCCACCACTTTCTCTGTGACCTCAGCCCTGTGCTGAA
ATTGTCCTGCTCTTCCATATTTGTCAATGAAATTGTGCAGATGACAGAAGCACCTATTGTTTTGGTGACT
CGTTTTCTCTGCATTGCTTTCTCTTATATACGAATCCTCACTACAGTTCTCAAGATTCCCTCTACTTCTG
GGAAACGCAAAGCCTTCTCCACCTGTGGTTTTTACCTCACCGTGGTGACGCTCTTTTATGGAAGCATCTT
CTGTGTCTATTTACAGCCCCCATCCACCTACGCTGTCAAGGACCACGTGGCAACAATTGTTTACACAGTT
TTGTCATCCATGCTCAATCCTTTTATCTACAGCCTGAGAAACAAAGACCTGAAACAGGGCCTGAGGAAGC
TTATGAGCAAGAGATCCTAG

Translation (309 aa):
MERINHTSSVSEFILLGLSSRPEDQKTLFVLFLIVYLVTITGNLLIILAIRFNPHLQTPMYFFLSFLSLT
DICFTTSVVPKMLMNFLSEKKTISYAGCLTQMYFLYALGNSDSCLLAVMAFDRYVAVCDPFHYVTTMSHH
HCVLLVAFSCSFPHLHSLLHTLLLNRLTFCDSNVIHHFLCDLSPVLKLSCSSIFVNEIVQMTEAPIVLVT
RFLCIAFSYIRILTTVLKIPSTSGKRKAFSTCGFYLTVVTLFYGSIFCVYLQPPSTYAVKDHVATIVYTV
LSSMLNPFIYSLRNKDLKQGLRKLMSKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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