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Report for CCDS87152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87152.1 Public Homo sapiens 3 PLSCR1 24 110 108 CCDS HistoryNCBI Gene:5359Re-query CCDS DB by CCDS ID:87152.1Re-query CCDS DB by GeneID:5359See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87152.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448787.6 ENSP00000411675.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448787.6Link to Ensembl Protein Viewer:ENSP00000411675.2Re-query CCDS DB by Nucleotide ID:ENST00000448787Re-query CCDS DB by Protein ID:ENSP00000411675
Original member Current member NCBI NM_001363874.1 NP_001350803.1 Accepted alive Link to Nucleotide Sequence:NM_001363874.1Link to Protein Sequence:NP_001350803.1Re-query CCDS DB by Nucleotide ID:NM_001363874Re-query CCDS DB by Protein ID:NP_001350803Link to BLAST:NP_001350803.1
Current member NCBI NM_001406038.1 NP_001392967.1 Accepted alive Link to Nucleotide Sequence:NM_001406038.1Link to Protein Sequence:NP_001392967.1Re-query CCDS DB by Nucleotide ID:NM_001406038Re-query CCDS DB by Protein ID:NP_001392967Link to BLAST:NP_001392967.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350803.1 237 O15162-2 237 100% 0 0
NP_001392967.1 237 O15162-2 237 100% 0 0

Chromosomal Locations for CCDS 87152.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146516045 146516101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146517006 146517167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146521544 146521705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146521833 146522053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146525605 146525647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146533470 146533538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGCTTCTCACCCGGAAACAAACTTGCCAGTTGGGTATCCTCCTCAGTATCCACCGACAGCATTCCAAGA
TAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAGTTTTAACAGGTTTTGAAACTAATAACAA
ATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGGAAGATACTGATTGCTGTACCCGA
AATTGCTGTGGGCCATCTAGACCTTTTACCTTGAGGATTATTGATAATATGGGTCAAGAAGTCATAACTC
TGGAGAGACCACTAAGATGTAGCAGCTGTTGTTGTCCCTGCTGCCTTCAGGAGATAGAAATCCAAGCTCC
TCCTGGTGTACCAATAGGTTATGTTATTCAGACTTGGCACCCATGTCTACCAAAGTTTACAATTCAAAAT
GAGAAAAGAGAGGATGTACTAAAAATAAGTGGTCCATGTGTTGTGTGCAGCTGTTGTGGAGATGTTGATT
TTGAGATTAAATCTCTTGATGAACAGTGTGTGGTTGGCAAAATTTCCAAGCACTGGACTGGAATTTTGAG
AGAGGCATTTACAGACGCTGATAACTTTGGAATCCAGTTCCCTTTAGACCTTGATGTTAAAATGAAAGCT
GTAATGATTGGTGCCTGTTTCCTCATTGACTTCATGTTTTTTGAAAGCACTGGCAGCCAGGAACAAAAAT
CAGGAGTGTGGTAG

Translation (237 aa):
MLLTRKQTCQLGILLSIHRQHSKIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTR
NCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQN
EKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKA
VMIGACFLIDFMFFESTGSQEQKSGVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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