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Report for CCDS44028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44028.1 Public Homo sapiens Y RPS4Y2 24 110 108 CCDS HistoryNCBI Gene:140032Re-query CCDS DB by CCDS ID:44028.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000629237.2 ENSP00000486252.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000629237.2Link to Ensembl Protein Viewer:ENSP00000486252.1Re-query CCDS DB by Nucleotide ID:ENST00000629237Re-query CCDS DB by Protein ID:ENSP00000486252
Original member Current member NCBI NM_001039567.3 NP_001034656.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039567.3Link to Protein Sequence:NP_001034656.1Re-query CCDS DB by Nucleotide ID:NM_001039567Re-query CCDS DB by Protein ID:NP_001034656Link to BLAST:NP_001034656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034656.1 263 Q8TD47 263 100% 0 0

Chromosomal Locations for CCDS 44028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 20756164 20756166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20756778 20756855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20759868 20760048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20761284 20761381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20768805 20768976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20779509 20779666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 20780931 20781032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGCCCGGGGCCCCAAGAAGCACTTGAAGCGTGTTGCAGCGCCGAAGCATTGGATGCTGGATAAACTAA
CTGGTGTATTTGCACCTCGTCCATCGACAGGTCCTCACAAGCTGAGGGAATGTCTTCCCCTGATAGTCTT
CCTCAGGAATAGACTCAAGTATGCATTGACTGGAGATGAGGTAAAGAAGATATGTATGCAACACTTCCTC
AAAATTGATGGCAAGGTTCGAGTGGACATCACATACCCTGCTGGATTCATAGATGTCATCAGCATTGAGA
AAACAGGTGAGCATTTCCGCCTGGTCTATAATACCAAGGGCTGTTTTGCTGTTCATCGTATCACAGTGGA
AGAGGCAAAGTACAAGTTGTGCAAAGTGAGGAAGATTACTGTGGGGACAAAGGGAATTCCACACCTGGTG
ACTCATGATGCTCGAACCATTCGCTACCCAGATCCTCTCATCAAGGTGAACGATACTGTGCAGATTGATT
TAGGGACTGGGAAGATAACCAGCTTTATCAAATTTGACACAGGCAATGTATGTATGGTGATTGCTGGAGC
TAACCTCGGTCGTGTTGGTGTGATCACAAACAGGGAAAGACATCCTGGTTCTTGCGATGTGGTACATGTG
AAGGATGCCAACGGCAACAGCTTTGCCACAAGGATTTCCAACATTTTTGTCATTGGCAATGGTAATAAAC
CTTGGATTTCCCTGCCCAGGGGAAAGGGCATCCGACTTACTATTGCTGAAGAGAGAGACAAGAGGCTGGC
TGCCAAACAGAGCAGTGGCTAA

Translation (263 aa):
MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFL
KIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLV
THDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHV
KDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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