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Report for CCDS58617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58617.1 Public Homo sapiens 18 AQP4 24 110 108 CCDS HistoryNCBI Gene:361Re-query CCDS DB by CCDS ID:58617.1Re-query CCDS DB by GeneID:361See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 58617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440832.7 ENSP00000393121.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440832.7Link to Ensembl Protein Viewer:ENSP00000393121.3Re-query CCDS DB by Nucleotide ID:ENST00000440832Re-query CCDS DB by Protein ID:ENSP00000393121
Original member Current member EBI ENST00000581374.5 ENSP00000462597.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581374.5Link to Ensembl Protein Viewer:ENSP00000462597.1Re-query CCDS DB by Nucleotide ID:ENST00000581374Re-query CCDS DB by Protein ID:ENSP00000462597
Original member Current member NCBI NM_001364286.1 NP_001351215.1 Accepted alive Link to Nucleotide Sequence:NM_001364286.1Link to Protein Sequence:NP_001351215.1Re-query CCDS DB by Nucleotide ID:NM_001364286Re-query CCDS DB by Protein ID:NP_001351215Link to BLAST:NP_001351215.1
Original member Current member NCBI NM_004028.5 NP_004019.1 Accepted alive Link to Nucleotide Sequence:NM_004028.5Link to Protein Sequence:NP_004019.1Re-query CCDS DB by Nucleotide ID:NM_004028Re-query CCDS DB by Protein ID:NP_004019Link to BLAST:NP_004019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351215.1 301 P55087-2 301 100% 0 0
NP_004019.1 301 P55087-2 301 100% 0 0

Chromosomal Locations for CCDS 58617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26856211 26856489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26860772 26860852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26861131 26861295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26862182 26862562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGTGGCTTTCAAAGGGGTCTGGACTCAAGCTTTCTGGAAAGCAGTCACAGCGGAATTTCTGGCCATGC
TTATTTTTGTTCTCCTCAGCCTGGGATCCACCATCAACTGGGGTGGAACAGAAAAGCCTTTACCGGTCGA
CATGGTTCTCATCTCCCTTTGCTTTGGACTCAGCATTGCAACCATGGTGCAGTGCTTTGGCCATATCAGC
GGTGGCCACATCAACCCTGCAGTGACTGTGGCCATGGTGTGCACCAGGAAGATCAGCATCGCCAAGTCTG
TCTTCTACATCGCAGCCCAGTGCCTGGGGGCCATCATTGGAGCAGGAATCCTCTATCTGGTCACACCTCC
CAGTGTGGTGGGAGGCCTGGGAGTCACCATGGTTCATGGAAATCTTACCGCTGGTCATGGTCTCCTGGTT
GAGTTGATAATCACATTTCAATTGGTGTTTACTATCTTTGCCAGCTGTGATTCCAAACGGACTGATGTCA
CTGGCTCAATAGCTTTAGCAATTGGATTTTCTGTTGCAATTGGACATTTATTTGCAATCAATTATACTGG
TGCCAGCATGAATCCCGCCCGATCCTTTGGACCTGCAGTTATCATGGGAAATTGGGAAAACCATTGGATA
TATTGGGTTGGGCCCATCATAGGAGCTGTCCTCGCTGGTGGCCTTTATGAGTATGTCTTCTGTCCAGATG
TTGAATTCAAACGTCGTTTTAAAGAAGCCTTCAGCAAAGCTGCCCAGCAAACAAAAGGAAGCTACATGGA
GGTGGAGGACAACAGGAGTCAGGTAGAGACGGATGACCTGATTCTAAAACCTGGAGTGGTGCATGTGATT
GACGTTGACCGGGGAGAGGAGAAGAAGGGGAAAGACCAATCTGGAGAGGTATTGTCTTCAGTATGA

Translation (301 aa):
MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHIS
GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLV
ELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWI
YWVGPIIGAVLAGGLYEYVFCPDVEFKRRFKEAFSKAAQQTKGSYMEVEDNRSQVETDDLILKPGVVHVI
DVDRGEEKKGKDQSGEVLSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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